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      Genetic blueprint of the zoonotic pathogen Toxocara canis

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          Abstract

          Toxocara canis is a zoonotic parasite of major socioeconomic importance worldwide. In humans, this nematode causes disease (toxocariasis) mainly in the under-privileged communities in developed and developing countries. Although relatively well studied from clinical and epidemiological perspectives, to date, there has been no global investigation of the molecular biology of this parasite. Here we use next-generation sequencing to produce a draft genome and transcriptome of T. canis to support future biological and biotechnological investigations. This genome is 317 Mb in size, has a repeat content of 13.5% and encodes at least 18,596 protein-coding genes. We study transcription in a larval, as well as adult female and male stages, characterize the parasite’s gene-silencing machinery, explore molecules involved in development or host–parasite interactions and predict intervention targets. The draft genome of T. canis should provide a useful resource for future molecular studies of this and other, related parasites.

          Abstract

          Toxocara canis is a zoonotic parasite of major worldwide socioeconomic importance. Here, the authors sequence the genome and transcriptome of T. canis, and highlight potential mechanisms involved in development and host–parasite interactions that could support the pursuit of new drug interventions.

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          Most cited references39

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          Genome sequence of the nematode C. elegans: a platform for investigating biology.

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          The 97-megabase genomic sequence of the nematode Caenorhabditis elegans reveals over 19,000 genes. More than 40 percent of the predicted protein products find significant matches in other organisms. There is a variety of repeated sequences, both local and dispersed. The distinctive distribution of some repeats and highly conserved genes provides evidence for a regional organization of the chromosomes.
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            Draft genome of the filarial nematode parasite Brugia malayi.

            Parasitic nematodes that cause elephantiasis and river blindness threaten hundreds of millions of people in the developing world. We have sequenced the approximately 90 megabase (Mb) genome of the human filarial parasite Brugia malayi and predict approximately 11,500 protein coding genes in 71 Mb of robustly assembled sequence. Comparative analysis with the free-living, model nematode Caenorhabditis elegans revealed that, despite these genes having maintained little conservation of local synteny during approximately 350 million years of evolution, they largely remain in linkage on chromosomal units. More than 100 conserved operons were identified. Analysis of the predicted proteome provides evidence for adaptations of B. malayi to niches in its human and vector hosts and insights into the molecular basis of a mutualistic relationship with its Wolbachia endosymbiont. These findings offer a foundation for rational drug design.
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              Drug resistance in veterinary helminths.

              At present, there is no effective alternative to chemical control of parasitic helminths where livestock are grazed intensively. Resistance to anthelmintics has become a major problem in veterinary medicine, and threatens both agricultural income and animal welfare. The molecular and biochemical basis of this resistance is not well understood. The lack of reliable biological and molecular tests means that we are not able to follow the emergence and spread of resistance alleles and clinical resistance as well as we need. This review summarizes some of the recent findings on resistance mechanisms, puts forward some recommendations for limiting its impact and suggests some priorities for research in this area.
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                Author and article information

                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Pub. Group
                2041-1723
                04 February 2015
                : 6
                : 6145
                Affiliations
                [1 ]State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences , Lanzhou 730046, Gansu Province, China
                [2 ]Faculty of Veterinary and Agricultural Sciences, The University of Melbourne , Victoria 3010, Australia
                [3 ]BGI , Shenzhen 518083, China
                [4 ]Department of Veterinary Disease Biology, University of Copenhagen , Copenhagen 2200, Denmark
                [5 ]Institute for Parasitology und Tropical Veterinary Medicine, Freie Universität Berlin , Berlin 14163, Germany
                [6 ]Department of Biochemistry and Molecular Biology, Monash University , Victoria 3800, Australia
                [7 ]Cancer and Stem Cell Biology, Duke-NUS Graduate Medical School , Singapore 138672, Republic of Singapore
                [8 ]Genome Institute of Singapore , 60 Biopolis Street, Singapore 138672, Republic of Singapore
                [9 ]Structural Chemistry Program, Eskitis Institute, Griffith University , Brisbane 4111, Queensland, Australia
                [10 ]HHMI, Division of Biology, California Institute of Technology , Pasadena 91125, California, USA
                Author notes
                Article
                ncomms7145
                10.1038/ncomms7145
                4327413
                25649139
                7f649616-d78c-4eee-8ab9-d2624d129b1a
                Copyright © 2015, Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved.

                This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/

                History
                : 16 August 2014
                : 11 December 2014
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