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      Transfer learning with deep convolutional neural network for liver steatosis assessment in ultrasound images

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          Abstract

          Purpose

          The nonalcoholic fatty liver disease is the most common liver abnormality. Up to date, liver biopsy is the reference standard for direct liver steatosis quantification in hepatic tissue samples. In this paper we propose a neural network-based approach for nonalcoholic fatty liver disease assessment in ultrasound.

          Methods

          We used the Inception-ResNet-v2 deep convolutional neural network pre-trained on the ImageNet dataset to extract high-level features in liver B-mode ultrasound image sequences. The steatosis level of each liver was graded by wedge biopsy. The proposed approach was compared with the hepatorenal index technique and the gray-level co-occurrence matrix algorithm. After the feature extraction, we applied the support vector machine algorithm to classify images containing fatty liver. Based on liver biopsy, the fatty liver was defined to have more than 5% of hepatocytes with steatosis. Next, we used the features and the Lasso regression method to assess the steatosis level.

          Results

          The area under the receiver operating characteristics curve obtained using the proposed approach was equal to 0.977, being higher than the one obtained with the hepatorenal index method, 0.959, and much higher than in the case of the gray-level co-occurrence matrix algorithm, 0.893. For regression the Spearman correlation coefficients between the steatosis level and the proposed approach, the hepatorenal index and the gray-level co-occurrence matrix algorithm were equal to 0.78, 0.80 and 0.39, respectively.

          Conclusions

          The proposed approach may help the sonographers automatically diagnose the amount of fat in the liver. The presented approach is efficient and in comparison with other methods does not require the sonographers to select the region of interest.

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          Most cited references28

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          Comparing correlated correlation coefficients.

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            cocor: A Comprehensive Solution for the Statistical Comparison of Correlations

            A valid comparison of the magnitude of two correlations requires researchers to directly contrast the correlations using an appropriate statistical test. In many popular statistics packages, however, tests for the significance of the difference between correlations are missing. To close this gap, we introduce cocor, a free software package for the R programming language. The cocor package covers a broad range of tests including the comparisons of independent and dependent correlations with either overlapping or nonoverlapping variables. The package also includes an implementation of Zou’s confidence interval for all of these comparisons. The platform independent cocor package enhances the R statistical computing environment and is available for scripting. Two different graphical user interfaces—a plugin for RKWard and a web interface—make cocor a convenient and user-friendly tool.
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              A Survey on Deep Learning in Medical Image Analysis

              Deep learning algorithms, in particular convolutional networks, have rapidly become a methodology of choice for analyzing medical images. This paper reviews the major deep learning concepts pertinent to medical image analysis and summarizes over 300 contributions to the field, most of which appeared in the last year. We survey the use of deep learning for image classification, object detection, segmentation, registration, and other tasks and provide concise overviews of studies per application area. Open challenges and directions for future research are discussed.
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                Author and article information

                Contributors
                mbyra@ippt.pan.pl
                Journal
                Int J Comput Assist Radiol Surg
                Int J Comput Assist Radiol Surg
                International Journal of Computer Assisted Radiology and Surgery
                Springer International Publishing (Cham )
                1861-6410
                1861-6429
                9 August 2018
                9 August 2018
                2018
                : 13
                : 12
                : 1895-1903
                Affiliations
                [1 ]ISNI 0000 0001 1958 0162, GRID grid.413454.3, Department of Ultrasound, Institute of Fundamental Technological Research, , Polish Academy of Sciences, ; Pawińskiego 5B, 02-106 Warsaw, Poland
                [2 ]ISNI 0000000113287408, GRID grid.13339.3b, Department of Internal Medicine, Hypertension and Vascular Diseases, , Medical University of Warsaw, ; Warsaw, Poland
                [3 ]ISNI 0000000113287408, GRID grid.13339.3b, Department of General, Transplant and Liver Surgery, , Medical University of Warsaw, ; Warsaw, Poland
                [4 ]ISNI 0000000113287408, GRID grid.13339.3b, Department of Pathology, Center for Biostructure Research, , Medical University of Warsaw, ; Warsaw, Poland
                Author information
                http://orcid.org/0000-0002-5759-2516
                Article
                1843
                10.1007/s11548-018-1843-2
                6223753
                30094778
                86f91ac6-5706-4a5a-81d7-6498d770c56e
                © The Author(s) 2018

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

                History
                : 3 February 2018
                : 31 July 2018
                Categories
                Original Article
                Custom metadata
                © CARS 2018

                nonalcoholic fatty liver disease,ultrasound imaging,deep learning,convolutional neural networks,hepatorenal index,transfer learning

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