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      Incidence of tick-borne spotted fever group Rickettsia species in rodents in two regions in Kazakhstan

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          Abstract

          Records on the distribution of Rickettsia spp. in their natural hosts in Central Asia are incomplete. Rodents and small mammals are potential natural reservoirs for Rickettsiae in their natural lifecycle. Studies about the maintenance of Rickettsia in wild animals are available for Western nations, but—to our knowledge—no studies and data are available in the Republic of Kazakhstan so far. The first case description of Rickettsioses in Kazakhstan was made in the 1950ies in the Almaty region and now Kyzylorda, East Kazakhstan, Pavlodar and North Kazakhstan are endemic areas. The existence of murine and endemic typhus was proven in arthropod vectors in the regions Kyzylorda and Almaty. Here we show for the first time investigations on tick-borne Rickettsia species detected by a pan-rickettsial citrate synthase gene ( gltA) real-time PCR in ear lobes of small mammals (n = 624) in Kazakhstan. From all analysed small mammals 2.72% were positive for Rickettsia raoultii, R. slovaca or R. conorii. Sequencing of the rickettsial gene OmpAIV and the 23S–5S interspacer region revealed a similar heritage of identified Rickettsia species that was observed in ticks in previous studies from the region. In summary, this study proves that rodents in Kazakhstan serve as a natural reservoir of Rickettsia spp.

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          MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

          The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
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            Global trends in emerging infectious diseases

            The next new disease Emerging infectious diseases are a major threat to health: AIDS, SARS, drug-resistant bacteria and Ebola virus are among the more recent examples. By identifying emerging disease 'hotspots', the thinking goes, it should be possible to spot health risks at an early stage and prepare containment strategies. An analysis of over 300 examples of disease emerging between 1940 and 2004 suggests that these hotspots can be accurately mapped based on socio-economic, environmental and ecological factors. The data show that the surveillance effort, and much current research spending, is concentrated in developed economies, yet the risk maps point to developing countries as the more likely source of new diseases. Supplementary information The online version of this article (doi:10.1038/nature06536) contains supplementary material, which is available to authorized users.
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              BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT

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                Author and article information

                Contributors
                lukaspeintner@bundeswehr.org
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                1 September 2022
                1 September 2022
                2022
                : 12
                : 14872
                Affiliations
                [1 ]GRID grid.275559.9, ISNI 0000 0000 8517 6224, Section of Experimental Virology, Institute of Medical Microbiology, , Jena University-Hospital, ; Jena, Germany
                [2 ]GRID grid.452463.2, Department Virology and Intracellular Agents, Bundeswehr Institute of Microbiology, , German Centre for Infection Research, Munich Partner Site, ; Neuherbergstraße 11, 80937 Munich, Germany
                [3 ]GRID grid.411095.8, ISNI 0000 0004 0477 2585, Center for International Health, , University Hospital, LMU, ; Munich, Germany
                [4 ]Aikimbayev’s National Scientific Center for Especially Dangerous Infections, Almaty, Kazakhstan
                [5 ]Scientific Practical Center of Sanitary Epidemiological Expertise and Monitoring-Branch of the National Center for Public Health, Almaty, Kazakhstan
                [6 ]Branch Aikimbayev’s National Scientific Center for Especially Dangerous Infections, Taldykorgan Antiplague Station, Taldykorgan, Kazakhstan
                [7 ]Branch Aikimbayev’s National Scientific Center for Especially Dangerous Infections, Oral Antiplague Station, Oral, Kazakhstan
                Author information
                http://orcid.org/0000-0003-1720-3923
                http://orcid.org/0000-0002-8879-6087
                http://orcid.org/0000-0003-0909-742X
                http://orcid.org/0000-0002-0445-1445
                Article
                19145
                10.1038/s41598-022-19145-0
                9437098
                36050456
                8be74ba3-bd33-40d9-ada7-327738c14af6
                © The Author(s) 2022

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 6 July 2022
                : 24 August 2022
                Funding
                Funded by: Auswärtiges Amt Deutschland
                Funded by: Sanitätsakademie der Bundeswehr (4256)
                Categories
                Article
                Custom metadata
                © The Author(s) 2022

                Uncategorized
                bacterial infection,microbial ecology
                Uncategorized
                bacterial infection, microbial ecology

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