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      Ancestrality and evolution of trait syndromes in finches (Fringillidae)

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          Abstract

          Species traits have been hypothesized by one of us (Ponge, 2013) to evolve in a correlated manner as species colonize stable, undisturbed habitats, shifting from “ancestral” to “derived” strategies. We predicted that generalism, r‐selection, sexual monomorphism, and migration/gregariousness are the ancestral states (collectively called strategy A) and evolved correlatively toward specialism, K‐selection, sexual dimorphism, and residence/territoriality as habitat stabilized (collectively called B strategy). We analyzed the correlated evolution of four syndromes, summarizing the covariation between 53 traits, respectively, involved in ecological specialization, r‐K gradient, sexual selection, and dispersal/social behaviors in 81 species representative of Fringillidae, a bird family with available natural history information and that shows variability for all these traits. The ancestrality of strategy A was supported for three of the four syndromes, the ancestrality of generalism having a weaker support, except for the core group Carduelinae (69 species). It appeared that two different B‐strategies evolved from the ancestral state A, both associated with highly predictable environments: one in poorly seasonal environments, called B1, with species living permanently in lowland tropics, with “slow pace of life” and weak sexual dimorphism, and one in highly seasonal environments, called B2, with species breeding out‐of‐the‐tropics, migratory, with a “fast pace of life” and high sexual dimorphism.

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          Conservatism of ecological niches in evolutionary time

          Theory predicts low niche differentiation between species over evolutionary time scales, but little empirical evidence is available. Reciprocal geographic predictions based on ecological niche models of sister taxon pairs of birds, mammals, and butterflies in southern Mexico indicate niche conservatism over several million years of independent evolution (between putative sister taxon pairs) but little conservatism at the level of families. Niche conservatism over such time scales indicates that speciation takes place in geographic, not ecological, dimensions and that ecological differences evolve later.
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            Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo.

            We describe a Bayesian method for investigating correlated evolution of discrete binary traits on phylogenetic trees. The method fits a continuous-time Markov model to a pair of traits, seeking the best fitting models that describe their joint evolution on a phylogeny. We employ the methodology of reversible-jump (RJ) Markov chain Monte Carlo to search among the large number of possible models, some of which conform to independent evolution of the two traits, others to correlated evolution. The RJ Markov chain visits these models in proportion to their posterior probabilities, thereby directly estimating the support for the hypothesis of correlated evolution. In addition, the RJ Markov chain simultaneously estimates the posterior distributions of the rate parameters of the model of trait evolution. These posterior distributions can be used to test among alternative evolutionary scenarios to explain the observed data. All results are integrated over a sample of phylogenetic trees to account for phylogenetic uncertainty. We implement the method in a program called RJ Discrete and illustrate it by analyzing the question of whether mating system and advertisement of estrus by females have coevolved in the Old World monkeys and great apes.
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              Multilocus resolution of phylogeny and timescale in the extant adaptive radiation of Hawaiian honeycreepers.

              Evolutionary theory has gained tremendous insight from studies of adaptive radiations. High rates of speciation, morphological divergence, and hybridization, combined with low sequence variability, however, have prevented phylogenetic reconstruction for many radiations. The Hawaiian honeycreepers are an exceptional adaptive radiation, with high phenotypic diversity and speciation that occurred within the geologically constrained setting of the Hawaiian Islands. Here we analyze a new data set of 13 nuclear loci and pyrosequencing of mitochondrial genomes that resolves the Hawaiian honeycreeper phylogeny. We show that they are a sister taxon to Eurasian rosefinches (Carpodacus) and probably came to Hawaii from Asia. We use island ages to calibrate DNA substitution rates, which vary substantially among gene regions, and calculate divergence times, showing that the radiation began roughly when the oldest of the current large Hawaiian Islands (Kauai and Niihau) formed, ~5.7 million years ago (mya). We show that most of the lineages that gave rise to distinctive morphologies diverged after Oahu emerged (4.0-3.7 mya) but before the formation of Maui and adjacent islands (2.4-1.9 mya). Thus, the formation of Oahu, and subsequent cycles of colonization and speciation between Kauai and Oahu, played key roles in generating the morphological diversity of the extant honeycreepers. Copyright © 2011 Elsevier Ltd. All rights reserved.
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                Author and article information

                Contributors
                ponge@mnhn.fr
                Journal
                Ecol Evol
                Ecol Evol
                10.1002/(ISSN)2045-7758
                ECE3
                Ecology and Evolution
                John Wiley and Sons Inc. (Hoboken )
                2045-7758
                21 October 2017
                December 2017
                : 7
                : 23 ( doiID: 10.1002/ece3.2017.7.issue-23 )
                : 9935-9953
                Affiliations
                [ 1 ] Muséum National d'Histoire Naturelle Mécanismes adaptatifs et évolution (MECADEV UMR 7179) Sorbonne Universités, MNHN, CNRS Brunoy France
                [ 2 ] Muséum National d'Histoire Naturelle Service de Systématique Moléculaire Paris France
                [ 3 ] Muséum National d'Histoire naturelle Institut de Systématique, Évolution, Biodiversité (ISYEB UMR 7205) CNRS, MNHN, UPMC, EPHE Sorbonne Universités Paris France
                [ 4 ] Muséum National d'Histoire Naturelle Centre d’Écologie et des Sciences de la Conservation (CESCO UMR 7204) MNHN, CNRS, UPMC Sorbonne Universités Paris France
                Author notes
                [*] [* ] Correspondence

                Jean‐François Ponge, Muséum National d'Histoire Naturelle, CNRS UMR 7179, Brunoy, France.

                Email: ponge@ 123456mnhn.fr

                Author information
                http://orcid.org/0000-0001-6504-5267
                Article
                ECE33420
                10.1002/ece3.3420
                5723631
                8d93d66f-d6d1-4e96-9b40-d064fb54d70d
                © 2017 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 08 March 2017
                : 27 July 2017
                : 19 August 2017
                Page count
                Figures: 8, Tables: 4, Pages: 19, Words: 10932
                Categories
                Original Research
                Original Research
                Custom metadata
                2.0
                ece33420
                December 2017
                Converter:WILEY_ML3GV2_TO_NLMPMC version:5.2.8 mode:remove_FC converted:10.12.2017

                Evolutionary Biology
                ancestral state,evolution,fringillidae,phylogeny,phylogeography,strategies
                Evolutionary Biology
                ancestral state, evolution, fringillidae, phylogeny, phylogeography, strategies

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