Journal ID (nlm-ta): PLoS One
Journal ID (iso-abbrev): PLoS ONE
Journal ID (publisher-id): plos
Journal ID (pmc): plosone
Title:
PLoS ONE
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Electronic):
1932-6203
Publication date
(Electronic):
5
February
2016
Publication date Collection: 2016
Volume: 11
Issue: 2
Electronic Location Identifier: e0148028
Affiliations
[1
]School of Microbiology, University College Cork, Cork, Ireland
[2
]Teagasc Food Research Centre, Moorepark, Fermoy, Ireland
[3
]Department of Biological Sciences Cork Institute of Technology, Cork, Ireland
[4
]Department of Computing, Cork Institute of Technology, Cork, Ireland
[5
]APC Microbiome Institute, University College Cork, Cork, Ireland
University of Illinois, UNITED STATES
Author notes
Competing Interests: The authors have declared that no competing interests exist.
Conceived and designed the experiments: PC MC AC FF. Performed the experiments: AC
FF. Analyzed the data: AC FF. Contributed reagents/materials/analysis tools: PC MC.
Wrote the paper: AC FF AOD CS RS PC MC.
Article
Publisher ID:
PONE-D-15-39300
DOI: 10.1371/journal.pone.0148028
PMC ID: 4746063
PubMed ID: 26849217
SO-VID: 8f6f4c98-9971-4fa8-a09e-b75c144fa185
License:
This is an open access article, free of all copyright, and may be freely reproduced,
distributed, transmitted, modified, built upon, or otherwise used by anyone for any
lawful purpose. The work is made available under the
Creative Commons CC0 public domain dedication.
This publication has emanated from research supported in part by a research grant
from Science Foundation Ireland (SFI) under Grant Number SFI/12/RC/2273 and 11/PI/1137
and by FP7 funded CFMATTERS (Cystic Fibrosis Microbiome-determined Antibiotic Therapy
Trial in Exacerbations: Results Stratified, Grant Agreement no. 603038). The funders
had no role in study design, data collection and analysis, decision to publish, or
preparation of the manuscript.
Subject:
Research Article
Subject:
Biology and life sciences
Subject:
Molecular biology
Subject:
Molecular biology techniques
Subject:
Cloning
Subject:
DNA cloning
Subject:
Shotgun Sequencing
Subject:
Research and analysis methods
Subject:
Molecular biology techniques
Subject:
Cloning
Subject:
DNA cloning
Subject:
Shotgun Sequencing
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Shotgun Sequencing
Subject:
Research and Analysis Methods
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Shotgun Sequencing
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Medical Microbiology
Subject:
Microbiome
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Microbial Genomics
Subject:
Microbiome
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Microbial Genomics
Subject:
Microbiome
Subject:
Biology and life sciences
Subject:
Biochemistry
Subject:
Nucleic acids
Subject:
RNA
Subject:
Non-coding RNA
Subject:
Ribosomal RNA
Subject:
Biology and life sciences
Subject:
Biochemistry
Subject:
Ribosomes
Subject:
Ribosomal RNA
Subject:
Biology and life sciences
Subject:
Cell biology
Subject:
Cellular structures and organelles
Subject:
Ribosomes
Subject:
Ribosomal RNA
Subject:
Biology and Life Sciences
Subject:
Computational Biology
Subject:
Genome Analysis
Subject:
Sequence Assembly Tools
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Genome Analysis
Subject:
Sequence Assembly Tools
Subject:
Biology and life sciences
Subject:
Molecular biology
Subject:
Molecular biology techniques
Subject:
Sequencing techniques
Subject:
DNA sequencing
Subject:
Gene Sequencing
Subject:
Research and analysis methods
Subject:
Molecular biology techniques
Subject:
Sequencing techniques
Subject:
DNA sequencing
Subject:
Gene Sequencing
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Biology Techniques
Subject:
Artificial Gene Amplification and Extension
Subject:
Polymerase Chain Reaction
Subject:
Research and Analysis Methods
Subject:
Molecular Biology Techniques
Subject:
Artificial Gene Amplification and Extension
Subject:
Polymerase Chain Reaction
Subject:
Research and Analysis Methods
Subject:
Database and Informatics Methods
Subject:
Biological Databases
Subject:
Sequence Databases
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Sequence Analysis
Subject:
Sequence Databases
Subject:
Research and Analysis Methods
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Sequence Analysis
Subject:
Sequence Databases
Subject:
Biology and Life Sciences
Subject:
Molecular Biology
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Sequence Analysis
Subject:
Sequence Alignment
Subject:
Research and Analysis Methods
Subject:
Molecular Biology Techniques
Subject:
Sequencing Techniques
Subject:
Sequence Analysis
Subject:
Sequence Alignment