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      Mini-G proteins: Novel tools for studying GPCRs in their active conformation

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          Abstract

          Mini-G proteins are the engineered GTPase domains of Gα subunits. They couple to GPCRs and recapitulate the increase in agonist affinity observed upon coupling of a native heterotrimeric G protein. Given the small size and stability of mini-G proteins, and their ease of expression and purification, they are ideal for biophysical studies of GPCRs in their fully active state. The first mini-G protein developed was mini-G s. Here we extend the family of mini-G proteins to include mini-G olf, mini-G i1, mini-G o1 and the chimeras mini-G s/q and mini-G s/i. The mini-G proteins were shown to couple to relevant GPCRs and to form stable complexes with purified receptors that could be purified by size exclusion chromatography. Agonist-bound GPCRs coupled to a mini-G protein showed higher thermal stability compared to the agonist-bound receptor alone. Fusion of GFP at the N-terminus of mini-G proteins allowed receptor coupling to be monitored by fluorescence-detection size exclusion chromatography (FSEC) and, in a separate assay, the affinity of mini-G protein binding to detergent-solubilised receptors was determined. This work provides the foundation for the development of any mini-G protein and, ultimately, for the structure determination of GPCRs in a fully active state.

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          Most cited references40

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          Activation and allosteric modulation of a muscarinic acetylcholine receptor

          Despite recent advances in crystallography of G protein-coupled receptors (GPCRs), little is known about the mechanism of their activation process, as only the β2 adrenergic receptor (β2AR) and rhodopsin have been crystallized in fully active conformations. Here, we report the structure of an agonist-bound, active state of the human M2 muscarinic acetylcholine receptor stabilized by a G-protein mimetic camelid antibody fragment isolated by conformational selection using yeast surface display. In addition to the expected changes in the intracellular surface, the structure reveals larger conformational changes in the extracellular region and orthosteric binding site than observed in the active states of the β2AR and rhodopsin. We also report the structure of the M2 receptor simultaneously binding the orthosteric agonist iperoxo and the positive allosteric modulator LY2119620. This structure reveals that LY2119620 recognizes a largely pre-formed binding site in the extracellular vestibule of the iperoxo-bound receptor, inducing a slight contraction of this outer binding pocket. These structures offer important insights into activation mechanism and allosteric modulation of muscarinic receptors.
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            Fluorescence-detection size-exclusion chromatography for precrystallization screening of integral membrane proteins.

            Formation of well-ordered crystals of membrane proteins is a bottleneck for structure determination by X-ray crystallography. Nevertheless, one can increase the probability of successful crystallization by precrystallization screening, a process by which one analyzes the monodispersity and stability of the protein-detergent complex. Traditionally, this has required microgram to milligram quantities of purified protein and a concomitant investment of time and resources. Here, we describe a rapid and efficient precrystallization screening strategy in which the target protein is covalently fused to green fluorescent protein (GFP) and the resulting unpurified protein is analyzed by fluorescence-detection size-exclusion chromatography (FSEC). This strategy requires only nanogram quantities of unpurified protein and allows one to evaluate localization and expression level, the degree of monodispersity, and the approximate molecular mass. We show the application of this precrystallization screening to four membrane proteins derived from prokaryotic or eukaryotic organisms.
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              Crystal structure of opsin in its G-protein-interacting conformation.

              Opsin, the ligand-free form of the G-protein-coupled receptor rhodopsin, at low pH adopts a conformationally distinct, active G-protein-binding state known as Ops*. A synthetic peptide derived from the main binding site of the heterotrimeric G protein-the carboxy terminus of the alpha-subunit (GalphaCT)-stabilizes Ops*. Here we present the 3.2 A crystal structure of the bovine Ops*-GalphaCT peptide complex. GalphaCT binds to a site in opsin that is opened by an outward tilt of transmembrane helix (TM) 6, a pairing of TM5 and TM6, and a restructured TM7-helix 8 kink. Contacts along the inner surface of TM5 and TM6 induce an alpha-helical conformation in GalphaCT with a C-terminal reverse turn. Main-chain carbonyl groups in the reverse turn constitute the centre of a hydrogen-bonded network, which links the two receptor regions containing the conserved E(D)RY and NPxxY(x)(5,6)F motifs. On the basis of the Ops*-GalphaCT structure and known conformational changes in Galpha, we discuss signal transfer from the receptor to the G protein nucleotide-binding site.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                20 April 2017
                2017
                : 12
                : 4
                : e0175642
                Affiliations
                [1 ]MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
                [2 ]Membrane Protein Structure Function Unit, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Department of Health and Human Services, Rockville, United States of America
                Indian Institute of Technology Kanpur, INDIA
                Author notes

                Competing Interests: CGT is a consultant, shareholder and member of the Scientific Advisory Board of Heptares Therapeutics. This does not alter our adherence to PLOS ONE policies on sharing data and materials. BC was also funded by a grant from Heptares Therapeutics.

                • Conceptualization: RN BC CGT.

                • Formal analysis: RN BC Singhal A. Strege CFW HD.

                • Funding acquisition: CGT RG.

                • Investigation: RN BC A. Singhal A. Strege CFW HD.

                • Methodology: RN BC.

                • Project administration: CGT RG.

                • Resources: PE BC RN.

                • Supervision: RG CGT.

                • Validation: RN BC A. Singhal A. Strege CFW HD RG CGT.

                • Visualization: RN CGT.

                • Writing – original draft: RN CGT.

                • Writing – review & editing: RN BC A. Singhal RG CGT.

                [¤]

                Current address: Warwick Integrative Synthetic Biology Centre, School of Life Sciences, Gibbet Hill Campus, University of Warwick, Warwick, United Kingdom

                Author information
                http://orcid.org/0000-0002-2008-9183
                Article
                PONE-D-17-04316
                10.1371/journal.pone.0175642
                5398546
                28426733
                945a0d8a-94de-4eca-b212-e41cc09227a1

                This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.

                History
                : 2 February 2017
                : 29 March 2017
                Page count
                Figures: 7, Tables: 2, Pages: 26
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100000781, European Research Council;
                Award ID: 339995
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100000265, Medical Research Council;
                Award ID: MC_U105197215
                Award Recipient :
                Funded by: Heptares Therapeutics
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/100000065, National Institute of Neurological Disorders and Stroke;
                Award ID: ZIA NS003016-11
                Award Recipient :
                This research was supported by the European Research Council (EMPSI 339995; R.N., A.S., C.G.T.), Heptares Therapeutics (B.C., C.G.T.), the Medical Research Council (MC_U105197215; A.S., P.E., C.G.T.) and the Intramural Research Program of the National Institutes of Health, National Institute of Neurological Disorders and Stroke (ZIA NS003016-11; C.F.W., H.D., R.G.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Biochemistry
                Proteins
                Transmembrane Receptors
                G Protein Coupled Receptors
                Biology and Life Sciences
                Cell Biology
                Signal Transduction
                Transmembrane Receptors
                G Protein Coupled Receptors
                Physical Sciences
                Materials Science
                Materials by Attribute
                Surfactants
                Detergents
                Research and Analysis Methods
                Chemical Characterization
                Binding Analysis
                Receptor Binding Assays
                Biology and Life Sciences
                Molecular Biology
                Macromolecular Structure Analysis
                Protein Structure
                Biology and Life Sciences
                Biochemistry
                Proteins
                Protein Structure
                Biology and Life Sciences
                Molecular Biology
                Macromolecular Structure Analysis
                Protein Structure
                Protein Structure Determination
                Biology and Life Sciences
                Biochemistry
                Proteins
                Protein Structure
                Protein Structure Determination
                Research and Analysis Methods
                Chemical Characterization
                Binding Analysis
                Earth Sciences
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                Physical Sciences
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