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      Phylogeny and biogeography of the African Bathyergidae: a review of patterns and processes

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          Abstract

          Background

          We review genealogical relationships, biogeographic patterns and broad historical drivers of speciation within the Bathyergidae, a group of endemic African rodents, as well as identify key taxa which need further research.

          Methods

          We sourced comparable cytochrome b sequence data (comparable data available for all members for the Family) and geographic information for all six genera of the African subterranean rodent. This information was combined into the most comprehensive and geographically representative evolutionary study for the Bathyergidae to date.

          Results

          Species richness within the Bathyergidae appears to be underestimated, with undescribed taxa in five of the six genera. Biogeographic patterns suggest large historical distributions, which were repeatedly fragmented by major landscape changes (especially rifting, uplift and drainage evolution) since the Miocene. Aside from vicariant events, other factors (ecological specialization, population-level responses and climatic change) may have been instrumental in driving divergences in the Bathyergidae. As such, adaptive differences may exist among both populations and species across their discrete ranges, driving independent evolutionary trajectories among taxa. In addition, highly fragmented distributions of divergent (and often relict) lineages indicates the possibility of narrow endemics restricted to diminishing suitable habitats. From this, it is clear that a systematic revision of the Bathyergidae is necessary; such a revision should include comprehensive sampling of all putative taxa, the addition of genomic information to assess adaptive differences, as well as ecological information.

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          Most cited references90

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          Trends, rhythms, and aberrations in global climate 65 Ma to present.

          Since 65 million years ago (Ma), Earth's climate has undergone a significant and complex evolution, the finer details of which are now coming to light through investigations of deep-sea sediment cores. This evolution includes gradual trends of warming and cooling driven by tectonic processes on time scales of 10(5) to 10(7) years, rhythmic or periodic cycles driven by orbital processes with 10(4)- to 10(6)-year cyclicity, and rare rapid aberrant shifts and extreme climate transients with durations of 10(3) to 10(5) years. Here, recent progress in defining the evolution of global climate over the Cenozoic Era is reviewed. We focus primarily on the periodic and anomalous components of variability over the early portion of this era, as constrained by the latest generation of deep-sea isotope records. We also consider how this improved perspective has led to the recognition of previously unforeseen mechanisms for altering climate.
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            The East African rift system

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              Tectonic development of the western branch of the East African rift system

              C Ebinger (1989)
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                Author and article information

                Contributors
                Journal
                PeerJ
                PeerJ
                PeerJ
                PeerJ
                PeerJ
                PeerJ Inc. (San Diego, USA )
                2167-8359
                15 October 2019
                2019
                : 7
                : e7730
                Affiliations
                [1 ]Centre for Ecological Genomics and Wildlife Conservation, Department of Zoology, University of Johannesburg , Johannesburg, Gauteng Province, South Africa
                [2 ]Department of Zoology and Entomology, University of Pretoria , Pretoria, Gauteng Province, South Africa
                Author information
                http://orcid.org/0000-0002-5334-5358
                Article
                7730
                10.7717/peerj.7730
                6798870
                9639a0b4-b02e-4b2e-a075-d54abc6fe019
                © 2019 Visser et al.

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.

                History
                : 22 February 2019
                : 23 August 2019
                Funding
                Funded by: South African National Research Foundation
                Funded by: South African Research Chairs Initiative
                The project was funded through a South African National Research Foundation (NRF) grant to Bettine Jansen van Vuuren. Jacobus H. Visser was financially supported (in the form of a doctoral bursary) by a South African Research Chairs Initiative (SARChI) grant awarded to Nigel C. Bennett. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Biodiversity
                Biogeography
                Ecology
                Evolutionary Studies
                Zoology

                african mole-rats,bathyergidae,biogeography,extra-limital,species richness,phylogeography

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