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      The naked truth: a comprehensive clarification and classification of current ‘myths’ in naked mole‐rat biology

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      1 , , 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9 , 10 , 11 , 12 , 13 , 14 , 15 , 16 , 17 , 18 , 19 , 20 , 9 , 21 , 22 , 1 , 23 , 24 , 25 , 2 , 2 , 26 , 27 , 3 , 28 , 6 , 1 , 1 , 23 , 29 , 1 , 21 , 24 , 1 , 30 , 31 , 9 , 2 , 17 , 1 , 32 , 33 , 34 , 1 , 35 , 36 , 37 , 18 , 25 , 1 , 38 , 39 , 2 , 40 , 24 , 28 , 22 , 27 , 3 , 23 ,
      Biological Reviews of the Cambridge Philosophical Society
      Blackwell Publishing Ltd
      naked mole‐rat, longevity, hypoxia, cancer, nociception, eusociality, cancer, thermoregulation, ageing, ecology

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          ABSTRACT

          The naked mole‐rat ( Heterocephalus glaber) has fascinated zoologists for at least half a century. It has also generated considerable biomedical interest not only because of its extraordinary longevity, but also because of unusual protective features (e.g. its tolerance of variable oxygen availability), which may be pertinent to several human disease states, including ischemia/reperfusion injury and neurodegeneration. A recent article entitled ‘Surprisingly long survival of premature conclusions about naked mole‐rat biology’ described 28 ‘myths’ which, those authors claimed, are a ‘perpetuation of beautiful, but falsified, hypotheses’ and impede our understanding of this enigmatic mammal. Here, we re‐examine each of these ‘myths’ based on evidence published in the scientific literature. Following Braude et al., we argue that these ‘myths’ fall into four main categories: ( i) ‘myths’ that would be better described as oversimplifications, some of which persist solely in the popular press; ( ii) ‘myths’ that are based on incomplete understanding, where more evidence is clearly needed; ( iii) ‘myths’ where the accumulation of evidence over the years has led to a revision in interpretation, but where there is no significant disagreement among scientists currently working in the field; ( iv ) ‘myths’ where there is a genuine difference in opinion among active researchers, based on alternative interpretations of the available evidence. The term ‘myth’ is particularly inappropriate when applied to competing, evidence‐based hypotheses, which form part of the normal evolution of scientific knowledge. Here, we provide a comprehensive critical review of naked mole‐rat biology and attempt to clarify some of these misconceptions.

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          Proteomics. Tissue-based map of the human proteome.

          Resolving the molecular details of proteome variation in the different tissues and organs of the human body will greatly increase our knowledge of human biology and disease. Here, we present a map of the human tissue proteome based on an integrated omics approach that involves quantitative transcriptomics at the tissue and organ level, combined with tissue microarray-based immunohistochemistry, to achieve spatial localization of proteins down to the single-cell level. Our tissue-based analysis detected more than 90% of the putative protein-coding genes. We used this approach to explore the human secretome, the membrane proteome, the druggable proteome, the cancer proteome, and the metabolic functions in 32 different tissues and organs. All the data are integrated in an interactive Web-based database that allows exploration of individual proteins, as well as navigation of global expression patterns, in all major tissues and organs in the human body. Copyright © 2015, American Association for the Advancement of Science.
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                Author and article information

                Contributors
                rbuffen@calicolabs.com
                es336@cam.ac.uk
                Journal
                Biol Rev Camb Philos Soc
                Biol Rev Camb Philos Soc
                10.1111/(ISSN)1469-185X
                BRV
                Biological Reviews of the Cambridge Philosophical Society
                Blackwell Publishing Ltd (Oxford, UK )
                1464-7931
                1469-185X
                03 September 2021
                February 2022
                : 97
                : 1 ( doiID: 10.1111/brv.v97.1 )
                : 115-140
                Affiliations
                [ 1 ] Calico Life Sciences LLC 1170 Veterans Blvd South San Francisco CA 94080 U.S.A.
                [ 2 ] Department of Biological Sciences University of Illinois at Chicago Chicago IL 60607 U.S.A.
                [ 3 ] Graduate Center City University of New York 365 Fifth Avenue New York NY 10016 U.S.A.
                [ 4 ] Moffitt Cancer Center 12902 Magnolia Drive Tampa FL 33612 U.S.A.
                [ 5 ] Department of Anesthesiology Stony Brook University 101 Nicolls Road Stony Brook NY 11794 U.S.A.
                [ 6 ] Max Delbrück Center for Molecular Medicine Robert‐Rössle‐Str 10 Berlin‐Buch 13092 Germany
                [ 7 ] Mammal Research Institute, Department of Zoology and Entomology University of Pretoria Pretoria 0002 South Africa
                [ 8 ] Department of Obstetrics, Gynecology & Reproductive Medicine Magee‐Womens Research Institute 204 Craft Avenue Pittsburgh PA 15213 U.S.A.
                [ 9 ] Department Biological Sciences Rondebosch Cape Town 7701 South Africa
                [ 10 ] Reproductive Neurobiology, Division of Women's Health School of Medicine, King's College London Westminster Bridge Road London SE1 7EH U.K.
                [ 11 ] Zoological Pathology Program University of Illinois 3505 Veterinary Medicine Basic Sciences Building, 2001 S Lincoln Avenue Urbana IL 6180 U.S.A.
                [ 12 ] Department of Pharmaceutical Sciences Northeast Ohio Medical University 4209 State Route 44 Rootstown OH 44272 U.S.A.
                [ 13 ] Northwest Vista College 3535 N. Ellison Drive San Antonio TX 78251 U.S.A.
                [ 14 ] School of Biological and Chemical Sciences Queen Mary University of London Mile End Road London E1 4NS U.K.
                [ 15 ] School of Engineering Newcastle University Merz Court Newcastle Upon Tyne NE1 7RU U.K.
                [ 16 ] Université Paris Descartes Faculté de Médecine 12 Rue de l'École de Médecine Paris 5006 France
                [ 17 ] Cornell University College of Veterinary Medicine Ithaca NY 14853 U.S.A.
                [ 18 ] Departments of Biology University of Rochester 402 Hutchison Hall Rochester NY 14627 U.S.A.
                [ 19 ] Cleveland Clinic Lerner Research Institute 9500 Euclid Avenue Cleveland OH 44195 U.S.A.
                [ 20 ] Department of Psychology University of Toronto Mississauga 3359 Mississauga Road North Mississauga ON L5L 1C6 Canada
                [ 21 ] Department of Aging and Longevity Research Kumamoto University 1‐1‐1 Honjo Kumamoto 860‐0811 Japan
                [ 22 ] Department of Evolutionary Studies of Biosystems The Graduate University for Advanced Studies Hayama 240‐0193 Japan
                [ 23 ] The School of the Biological Sciences University of Cambridge Tennis Court Road Cambridge CB2 1PD U.K.
                [ 24 ] Companion Animal Research, School of Veterinary Medicine Azabu University Sagamihara 252‐5201 Japan
                [ 25 ] Department of Cancer Biology The Scripps Research Institute Scripps Florida Jupiter FL 33458 U.S.A.
                [ 26 ] Department of Otolaryngology Johns Hopkins School of Medicine Baltimore MD 21205 U.S.A.
                [ 27 ] A.N. Severtsov Institute of Ecology and Evolution Russian Academy of Sciences Leninskii pr. 33 Moscow 119071 Russia
                [ 28 ] Biology Department The City College of New York 138th Street and Convent Avenue New York NY 10031 U.S.A.
                [ 29 ] College of Staten Island in the City University of New York 2800 Victory Blvd Staten Island NY 10314 U.S.A.
                [ 30 ] The Rockefeller University 1230 York Avenue New York NY 10065 U.S.A.
                [ 31 ] Department of Life Sciences The University of Tokyo 7‐3‐1 Hongo Tokyo 153‐8902 Japan
                [ 32 ] Biology Department University of Ottawa 30 Marie Curie Ottawa ON K1N 6N5 Canada
                [ 33 ] Groningen Department of Otorhinolaryngology University Medical Center Postbus 30.001 Groningen RB 9700 The Netherlands
                [ 34 ] Cologne Excellence Cluster for Cellular Stress Responses in Aging‐Associated Diseases (CECAD) University Hospital Cologne Joseph‐Stelzmann‐Street 26 Cologne 50931 Germany
                [ 35 ] Barshop Institute for Longevity and Aging Studies University of Texas Health Science Center 4939 Charles Katz Dr. San Antonio TX 78229 U.S.A.
                [ 36 ] Department of Neuroscience Yale University School of Medicine 200 South Frontage Road, SHM C‐303 New Haven CT 06510 U.S.A.
                [ 37 ] Department of Anatomy School of Medicine, Southern Illinois University 975 S. Normal Carbondale IL 62901 U.S.A.
                [ 38 ] Department of Biology Carleton University 1125 Colonel By Drive Ottawa ON K1S 5B6 Canada
                [ 39 ] Department of Genetics – Blavatnik Institute Harvard Medical School 77 Avenue Louis Pasteur Boston MA 02115 U.S.A.
                [ 40 ] Fondation pour la recherche en Physiologie Université Catholique de Louvain Clos Chapelle‐aux‐Champs 30 Woluwe‐saint Lambert 1200 Belgium
                Author notes
                [*] [* ] Authors for correspondence (Tel.: +1 19176587634; E‐mail: rbuffen@ 123456calicolabs.com ); (Tel.: +44 1223 334048; E‐mail: es336@ 123456cam.ac.uk )

                Author information
                https://orcid.org/0000-0002-9864-7974
                https://orcid.org/0000-0001-9412-6859
                https://orcid.org/0000-0002-2890-6352
                https://orcid.org/0000-0001-7845-0720
                https://orcid.org/0000-0002-6128-7944
                https://orcid.org/0000-0002-2447-2948
                https://orcid.org/0000-0002-2699-1979
                Article
                BRV12791
                10.1111/brv.12791
                9277573
                34476892
                e788a44c-45cb-4831-a253-0cc793e1f361
                © 2021 The Authors. Biological Reviews published by John Wiley & Sons Ltd on behalf of Cambridge Philosophical Society.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 17 August 2021
                : 15 February 2021
                : 18 August 2021
                Page count
                Figures: 4, Tables: 1, Pages: 26, Words: 27839
                Funding
                Funded by: Calico Life Sciences, LLC
                Funded by: Dunhill Medical Trust , doi 10.13039/501100000377;
                Award ID: RPGF2002\188
                Categories
                Original Article
                Original Articles
                Custom metadata
                2.0
                February 2022
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.1.7 mode:remove_FC converted:18.07.2022

                Ecology
                naked mole‐rat,longevity,hypoxia,cancer,nociception,eusociality,thermoregulation,ageing,ecology
                Ecology
                naked mole‐rat, longevity, hypoxia, cancer, nociception, eusociality, thermoregulation, ageing, ecology

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