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      Prediction of type 2 diabetes mellitus using hematological factors based on machine learning approaches: a cohort study analysis

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          Abstract

          Type 2 Diabetes Mellitus (T2DM) is a significant public health problem globally. The diagnosis and management of diabetes are critical to reduce the diabetes complications including cardiovascular disease and cancer. This study was designed to assess the potential association between T2DM and routinely measured hematological parameters. This study was a subsample of 9000 adults aged 35–65 years recruited as part of Mashhad stroke and heart atherosclerotic disorder (MASHAD) cohort study. Machine learning techniques including logistic regression (LR), decision tree (DT) and bootstrap forest (BF) algorithms were applied to analyze data. All data analyses were performed using SPSS version 22 and SAS JMP Pro version 13 at a significant level of 0.05. Based on the performance indices, the BF model gave high accuracy, precision, specificity, and AUC. Previous studies suggested the positive relationship of triglyceride-glucose (TyG) index with T2DM, so we considered the association of TyG index with hematological factors. We found this association was aligned with their results regarding T2DM, except MCHC. The most effective factors in the BF model were age and WBC (white blood cell). The BF model represented a better performance to predict T2DM. Our model provides valuable information to predict T2DM like age and WBC.

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          WITHDRAWN: Global and regional diabetes prevalence estimates for 2019 and projections for 2030 and 2045: results from the International Diabetes Federation Diabetes Atlas, 9th edition

          To provide global estimates of diabetes prevalence for 2019 and projections for 2030 and 2045.
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            Applied Logistic Regression

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              Mojo Hand, a TALEN design tool for genome editing applications

              Background Recent studies of transcription activator-like (TAL) effector domains fused to nucleases (TALENs) demonstrate enormous potential for genome editing. Effective design of TALENs requires a combination of selecting appropriate genetic features, finding pairs of binding sites based on a consensus sequence, and, in some cases, identifying endogenous restriction sites for downstream molecular genetic applications. Results We present the web-based program Mojo Hand for designing TAL and TALEN constructs for genome editing applications (http://www.talendesign.org). We describe the algorithm and its implementation. The features of Mojo Hand include (1) automatic download of genomic data from the National Center for Biotechnology Information, (2) analysis of any DNA sequence to reveal pairs of binding sites based on a user-defined template, (3) selection of restriction-enzyme recognition sites in the spacer between the TAL monomer binding sites including options for the selection of restriction enzyme suppliers, and (4) output files designed for subsequent TALEN construction using the Golden Gate assembly method. Conclusions Mojo Hand enables the rapid identification of TAL binding sites for use in TALEN design. The assembly of TALEN constructs, is also simplified by using the TAL-site prediction program in conjunction with a spreadsheet management aid of reagent concentrations and TALEN formulation. Mojo Hand enables scientists to more rapidly deploy TALENs for genome editing applications.
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                Author and article information

                Contributors
                esmailyh@mums.ac.ir
                ghayourm@mums.ac.ir
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                12 January 2023
                12 January 2023
                2023
                : 13
                : 663
                Affiliations
                [1 ]GRID grid.411583.a, ISNI 0000 0001 2198 6209, International UNESCO Center for Health-Related Basic Sciences and Human Nutrition, , Mashhad University of Medical Sciences, ; Mashhad, 99199-91766 Iran
                [2 ]GRID grid.411301.6, ISNI 0000 0001 0666 1211, Department of Applied Mathematics, , Ferdowsi University of Mashhad, ; Mashhad, Iran
                [3 ]GRID grid.411768.d, ISNI 0000 0004 1756 1744, Faculty of Medicine, , Islamic Azad University of Mashhad, ; Mashhad, Iran
                [4 ]GRID grid.411583.a, ISNI 0000 0001 2198 6209, Student Research Committee, School of Medicine, , Mashhad University of Medical Science, ; Mashhad, Iran
                [5 ]GRID grid.411583.a, ISNI 0000 0001 2198 6209, Student Research Committee, Department of Biostatistics, School of Health, , Mashhad University of Medical Sciences, ; Mashhad, Iran
                [6 ]GRID grid.411583.a, ISNI 0000 0001 2198 6209, Student Research Committee, School of Paramedical Sciences, , Mashhad University of Medical Sciences, ; Mashhad, Iran
                [7 ]GRID grid.411583.a, ISNI 0000 0001 2198 6209, Department of Nutrition, School of Medicine, , Mashhad University of Medical Sciences, ; Mashhad, Iran
                [8 ]GRID grid.43582.38, ISNI 0000 0000 9852 649X, School of Public Health, , Loma Linda University, ; Loma Linda, CA USA
                [9 ]GRID grid.414601.6, ISNI 0000 0000 8853 076X, Division of Medical Education, , Brighton and Sussex Medical School, ; Brighton, UK
                [10 ]GRID grid.411583.a, ISNI 0000 0001 2198 6209, Social Determinants of Health Research Center, , Mashhad University of Medical Sciences, ; Mashhad, Iran
                [11 ]GRID grid.411583.a, ISNI 0000 0001 2198 6209, Department of Biostatistics, School of Health, , Mashhad University of Medical Sciences, ; Mashhad, Iran
                Article
                27340
                10.1038/s41598-022-27340-2
                9837189
                36635303
                a6f8fc42-3dac-466e-b75c-032bbb675be0
                © The Author(s) 2023

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 18 October 2022
                : 30 December 2022
                Categories
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                Custom metadata
                © The Author(s) 2023

                Uncategorized
                metabolic disorders,machine learning,statistical methods,predictive markers
                Uncategorized
                metabolic disorders, machine learning, statistical methods, predictive markers

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