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      Temporal Microbial Community Dynamics Within a Unique Acid Saline Lake

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          Abstract

          Lake Magic is an extremely acidic, hypersaline lake found in Western Australia, with the highest concentrations of aluminum and silica in the world. Previous studies of Lake Magic diversity have revealed that the lake hosts acid- and halotolerant bacterial and fungal species. However, they have not canvassed microbial population dynamics across flooding, evapo-concentration and desiccation stages. In this study, we used amplicon sequencing and potential function prediction on sediment and salt mat samples. We observed that the bacterial and fungal diversity in Lake Magic is strongly driven by carbon, temperature, pH and salt concentrations at the different stages of the lake. We also saw that the fungal diversity decreased as the environmental conditions became more extreme. However, prokaryotic diversity was very dynamic and bacteria dominated archaeal species, both in abundance and diversity, perhaps because bacteria better tolerate the extreme variation in conditions. Bacterial species diversity was the highest during early flooding stage and decreased during more stressful conditions. We observed an increase in acid tolerant and halotolerant species in the sediment, involved in functions such as sulfur and iron metabolism, i.e., species involved in buffering the external environment. Thus, due to activity within the microbial community, the environmental conditions in the sediment do not change to the same degree as conditions in the salt mat, resulting in the sediment becoming a safe haven for microbes, which are able to thrive during the extreme conditions of the evapo-concentration and desiccation stages.

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          The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

          SILVA (from Latin silva, forest, http://www.arb-silva.de) is a comprehensive web resource for up to date, quality-controlled databases of aligned ribosomal RNA (rRNA) gene sequences from the Bacteria, Archaea and Eukaryota domains and supplementary online services. The referred database release 111 (July 2012) contains 3 194 778 small subunit and 288 717 large subunit rRNA gene sequences. Since the initial description of the project, substantial new features have been introduced, including advanced quality control procedures, an improved rRNA gene aligner, online tools for probe and primer evaluation and optimized browsing, searching and downloading on the website. Furthermore, the extensively curated SILVA taxonomy and the new non-redundant SILVA datasets provide an ideal reference for high-throughput classification of data from next-generation sequencing approaches.
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            QIIME allows analysis of high-throughput community sequencing data.

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              AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS

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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                24 June 2021
                2021
                : 12
                : 649594
                Affiliations
                [1] 1School of Agriculture and Environment, The University of Western Australia , Perth, WA, Australia
                [2] 2The Marshall Centre of Infectious Diseases, School of Biological Sciences, The University of Western Australia , Perth, WA, Australia
                [3] 3Department of Computer Science and Engineering, The University of Western Australia , Perth, WA, Australia
                [4] 4Centre for Environment and Life Sciences, CSIRO Land Water , Perth, WA, Australia
                Author notes

                Edited by: Brian P. Hedlund, University of Nevada, Las Vegas, United States

                Reviewed by: Melanie R. Mormile, Missouri University of Science and Technology, United States; Bonnie K. Baxter, Westminster College, United States

                *Correspondence: Noor-Ul-Huda Ghori, noor-ul-huda.ghori@ 123456uwa.edu.au

                This article was submitted to Extreme Microbiology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2021.649594
                8264302
                ab13e9cf-df4e-4847-aba7-f655f6a2732d
                Copyright © 2021 Ghori, Wise and Whiteley.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 05 January 2021
                : 04 June 2021
                Page count
                Figures: 6, Tables: 2, Equations: 0, References: 51, Pages: 14, Words: 0
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                poly-extremophilic,acid saline lake,taxogenomics,amplicon sequencing,haloacidophiles

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