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      Curvature-based Methods for Brain Network Analysis

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          Abstract

          The human brain forms functional networks on all spatial scales. Modern fMRI scanners allow for resolving functional brain data in high resolution, enabling the study of large-scale networks that relate to cognitive processes. The analysis of such networks forms a cornerstone of experimental neuroscience. Due to the immense size and complexity of the underlying data sets, efficient evaluation and visualization pose challenges for data analysis. In this study, we combine recent advances in experimental neuroscience and applied mathematics to perform a mathematical characterization of complex networks constructed from fMRI data. We use task-related edge densities [Lohmann et al., 2016] for constructing networks whose nodes represent voxels in the fMRI data and whose edges represent the task-related changes in synchronization between them. This construction captures the dynamic formation of patterns of neuronal activity and therefore efficiently represents the connectivity structure between brain regions. Using geometric methods that utilize Forman-Ricci curvature as an edge-based network characteristic [Weber et al., 2017], we perform a mathematical analysis of the resulting complex networks. We motivate the use of edge-based characteristics to evaluate the network structure with geometric methods. Our results identify important structural network features including long-range connections of high curvature acting as bridges between major network components. The geometric features link curvature to higher order network organization that could aid in understanding the connectivity and interplay of brain regions in cognitive processes.

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          A software tool for interactive exploration of intrinsic functional connectivity opens new perspectives for brain surgery.

          Functional connectivity analysis of resting-state functional magnetic resonance imaging data (fcrs-fMRI) has been shown to be a robust non-invasive method for localization of functional networks (without using specific tasks) and to be promising for presurgical planning. However, in order to transfer the approach to everyday clinical practice, fcrs-fMRI needs to be further validated and made easily accessible to neurosurgeons. This paper addresses the latter by presenting a software tool designed for neurosurgeons for analyzing and visualizing fcrs-fMRI data. A prototypical interactive visualization tool was developed to enable neurosurgeons to explore functional connectivity data and evaluate its usability. The implementation builds upon LIPSIA, an established software package for the assessment of functional neuroimaging data, and integrates the selection of a region-of-interest with the computation and visualization of functionally connected areas. The tool was used to explore data from a healthy participant and eight brain lesion patients. The usability of the software was evaluated with four neurosurgeons previously unacquainted with the methodology, who were asked to identify prominent, large-scale cortical networks. With this novel tool, previously published findings, such as tumor displacement of the sensorimotor cortex and other disturbances of functional networks, were reproduced. The neurosurgeons were able to consistently obtain results similar to the results of an expert, with the exception of the language network. Immediate feedback helped to pinpoint functional networks quickly and intuitively, with even inexperienced users requiring less than 3 min per network. Although fcrs-fMRI is a nascent method still undergoing evaluation with respect to established standards, the interactive software is nonetheless a promising tool for non-invasive exploration of individual functional connectivity networks in neurosurgical practice, both for well-known networks and for those less typically addressed.
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            Forman-Ricci flow for change detection in large dynamic data sets

            We present a viable solution to the challenging question of change detection in complex networks inferred from large dynamic data sets. Building on Forman's discretization of the classical notion of Ricci curvature, we introduce a novel geometric method to characterize different types of real-world networks with an emphasis on peer-to-peer networks. Furthermore we adapt the classical Ricci flow that already proved to be a powerful tool in image processing and graphics, to the case of undirected and weighted networks. The application of the proposed method on peer-to-peer networks yields insights into topological properties and the structure of their underlying data.
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              Task-related edge density (TED) - a new method for revealing large-scale network formation in fMRI data of the human brain

              The formation of transient networks in response to external stimuli or as a reflection of internal cognitive processes is a hallmark of human brain function. However, its identification in fMRI data of the human brain is notoriously difficult. Here we propose a new method of fMRI data analysis that tackles this problem by considering large-scale, task-related synchronisation networks. Networks consist of nodes and edges connecting them, where nodes correspond to voxels in fMRI data, and the weight of an edge is determined via task-related changes in dynamic synchronisation between their respective times series. Based on these definitions, we developed a new data analysis algorithm that identifies edges in a brain network that differentially respond in unison to a task onset and that occur in dense packs with similar characteristics. Hence, we call this approach "Task-related Edge Density" (TED). TED proved to be a very strong marker for dynamic network formation that easily lends itself to statistical analysis using large scale statistical inference. A major advantage of TED compared to other methods is that it does not depend on any specific hemodynamic response model, and it also does not require a presegmentation of the data for dimensionality reduction as it can handle large networks consisting of tens of thousands of voxels. We applied TED to fMRI data of a fingertapping task provided by the Human Connectome Project. TED revealed network-based involvement of a large number of brain areas that evaded detection using traditional GLM-based analysis. We show that our proposed method provides an entirely new window into the immense complexity of human brain function.
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                Author and article information

                Journal
                2017-07-01
                Article
                1707.00180
                aceacb8a-a1a9-4f49-aa5d-dde7aa179688

                http://arxiv.org/licenses/nonexclusive-distrib/1.0/

                History
                Custom metadata
                Under Review
                q-bio.NC cs.DM cs.SI

                Social & Information networks,Discrete mathematics & Graph theory,Neurosciences

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