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      Automatic acoustic recognition of pollinating bee species can be highly improved by Deep Learning models accompanied by pre-training and strong data augmentation

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          Abstract

          Introduction

          Bees capable of performing floral sonication (or buzz-pollination) are among the most effective pollinators of blueberries. However, the quality of pollination provided varies greatly among species visiting the flowers. Consequently, the correct identification of flower visitors becomes indispensable to distinguishing the most efficient pollinators of blueberry. However, taxonomic identification normally depends on microscopic characteristics and the active participation of experts in the decision-making process. Moreover, the many species of bees (20,507 worldwide) and other insects are a challenge for a decreasing number of insect taxonomists. To overcome the limitations of traditional taxonomy, automatic classification systems of insects based on Machine-Learning (ML) have been raised for detecting and distinguishing a wide variety of bioacoustic signals, including bee buzzing sounds. Despite that, classical ML algorithms fed by spectrogram-type data only reached marginal performance for bee ID recognition. On the other hand, emerging systems from Deep Learning (DL), especially Convolutional Neural Networks (CNNs), have provided a substantial boost to classification performance in other audio domains, but have yet to be tested for acoustic bee species recognition tasks. Therefore, we aimed to automatically identify blueberry pollinating bee species based on characteristics of their buzzing sounds using DL algorithms.

          Methods

          We designed CNN models combined with Log Mel-Spectrogram representations and strong data augmentation and compared their performance at recognizing blueberry pollinating bee species with the current state-of-the-art models for automatic recognition of bee species.

          Results and Discussion

          We found that CNN models performed better at assigning bee buzzing sounds to their respective taxa than expected by chance. However, CNN models were highly dependent on acoustic data pre-training and data augmentation to outperform classical ML classifiers in recognizing bee buzzing sounds. Under these conditions, the CNN models could lead to automating the taxonomic recognition of flower-visiting bees of blueberry crops. However, there is still room to improve the performance of CNN models by focusing on recording samples for poorly represented bee species. Automatic acoustic recognition associated with the degree of efficiency of a bee species to pollinate a particular crop would result in a comprehensive and powerful tool for recognizing those that best pollinate and increase fruit yields.

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          Most cited references79

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          Deep learning.

          Deep learning allows computational models that are composed of multiple processing layers to learn representations of data with multiple levels of abstraction. These methods have dramatically improved the state-of-the-art in speech recognition, visual object recognition, object detection and many other domains such as drug discovery and genomics. Deep learning discovers intricate structure in large data sets by using the backpropagation algorithm to indicate how a machine should change its internal parameters that are used to compute the representation in each layer from the representation in the previous layer. Deep convolutional nets have brought about breakthroughs in processing images, video, speech and audio, whereas recurrent nets have shone light on sequential data such as text and speech.
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            ImageNet: A large-scale hierarchical image database

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              EfficientNet: Rethinking Model Scaling for Convolutional Neural Networks

              Convolutional Neural Networks (ConvNets) are commonly developed at a fixed resource budget, and then scaled up for better accuracy if more resources are available. In this paper, we systematically study model scaling and identify that carefully balancing network depth, width, and resolution can lead to better performance. Based on this observation, we propose a new scaling method that uniformly scales all dimensions of depth/width/resolution using a simple yet highly effective compound coefficient. We demonstrate the effectiveness of this method on scaling up MobileNets and ResNet. To go even further, we use neural architecture search to design a new baseline network and scale it up to obtain a family of models, called EfficientNets, which achieve much better accuracy and efficiency than previous ConvNets. In particular, our EfficientNet-B7 achieves state-of-the-art 84.3% top-1 accuracy on ImageNet, while being 8.4x smaller and 6.1x faster on inference than the best existing ConvNet. Our EfficientNets also transfer well and achieve state-of-the-art accuracy on CIFAR-100 (91.7%), Flowers (98.8%), and 3 other transfer learning datasets, with an order of magnitude fewer parameters. Source code is at https://github.com/tensorflow/tpu/tree/master/models/official/efficientnet. ICML 2019
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                Author and article information

                Contributors
                URI : https://loop.frontiersin.org/people/2251916
                URI : https://loop.frontiersin.org/people/2071482
                URI : https://loop.frontiersin.org/people/2071147
                URI : https://loop.frontiersin.org/people/815488
                Journal
                Front Plant Sci
                Front Plant Sci
                Front. Plant Sci.
                Frontiers in Plant Science
                Frontiers Media S.A.
                1664-462X
                14 April 2023
                2023
                : 14
                : 1081050
                Affiliations
                [1] 1 Instituto de Informatica, Universidade Federal de Goias , Goiania, Goias, Brazil
                [2] 2 Laboratorio Ecologıa de Abejas, Departamento de Biologıa y Quımica, Facultad de Ciencias Basicas, Universidad Catolica del Maule , Talca, Chile
                Author notes

                Edited by: Dun Wang, Northwest A&F University, China

                Reviewed by: Chunsheng Hou, Institute of Bast Fiber Crops (CAAS), China; Jenni Stockan, James Hutton Institute, United Kingdom

                *Correspondence: José Neiva Mesquita-Neto, jmesquita@ 123456ucm.cl

                This article was submitted to Sustainable and Intelligent Phytoprotection, a section of the journal Frontiers in Plant Science

                Article
                10.3389/fpls.2023.1081050
                10140520
                37123860
                b091d7b7-4f82-4991-8992-3bc8f03c2e82
                Copyright © 2023 Ferreira, da Silva, Mesquita, Rosa, Monzón and Mesquita-Neto

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 27 October 2022
                : 20 March 2023
                Page count
                Figures: 3, Tables: 4, Equations: 6, References: 79, Pages: 12, Words: 7334
                Funding
                Funded by: Agencia Nacional de Investigación y Desarrollo , doi 10.13039/501100020884;
                Award ID: Fondecyt Iniciación en Investigación 11190013
                Funded by: Fondo de Innovación para la Competitividad , doi 10.13039/501100016014;
                Funded by: Agencia Nacional de Investigación y Desarrollo , doi 10.13039/501100020884;
                This work was supported by the ANID/Fondecyt Iniciación en Investigación under grant No. 11190013, FIC GORE Maule under grant No. BIP- 40.019.177–0, and ANID/CONICYT FONDECYT Regular under grant No. 1201893.
                Categories
                Plant Science
                Original Research

                Plant science & Botany
                buzz-pollinated crops,ecosystem services,crop pollination,machine-learning,blueberry crops

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