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      Molecular cloning of the gene promoter encoding the human Ca Vγ 2/Stargazin divergent transcript ( CACNG2-DT): characterization and regulation by the cAMP-PKA/CREB signaling pathway

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          Abstract

          Ca Vγ 2 (Stargazin or TARPγ 2) is a protein expressed in various types of neurons whose function was initially associated with a decrease in the functional expression of voltage-gated presynaptic Ca 2+ channels (Ca V) and which is now known to promote the trafficking of the postsynaptic α-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid receptors (AMPAR) towards the cell membrane. Alterations in Ca Vγ 2 expression has been associated with several neurological disorders, such as absence epilepsy. However, its regulation at the transcriptional level has not been intensively addressed. It has been reported that the promoter of the Cacng2 gene, encoding the rat Ca Vγ 2, is bidirectional and regulates the transcription of a long non-coding RNA (lncRNA) in the antisense direction. Here, we investigate the proximal promoter region of the human CACNG2 gene in the antisense direction and show that this region includes two functional cAMP response elements that regulate the expression of a lncRNA called CACNG2-DT. The activity of these sites is significantly enhanced by forskolin, an adenylate cyclase activator, and inhibited by H89, a protein kinase A (PKA) antagonist. Therefore, this regulatory mechanism implies the activation of G protein-coupled receptors and downstream phosphorylation. Interestingly, we also found that the expression of CACNG2-DT may increase the levels of the Ca Vγ 2 subunit. Together, these data provide novel information on the organization of the human CACNG2-DT gene promoter, describe modulatory domains and mechanisms that can mediate various regulatory inputs, and provide initial information on the molecular mechanisms that regulate the functional expression of the Ca Vγ 2 protein.

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          Modular regulatory principles of large non-coding RNAs.

          It is clear that RNA has a diverse set of functions and is more than just a messenger between gene and protein. The mammalian genome is extensively transcribed, giving rise to thousands of non-coding transcripts. Whether all of these transcripts are functional is debated, but it is evident that there are many functional large non-coding RNAs (ncRNAs). Recent studies have begun to explore the functional diversity and mechanistic role of these large ncRNAs. Here we synthesize these studies to provide an emerging model whereby large ncRNAs might achieve regulatory specificity through modularity, assembling diverse combinations of proteins and possibly RNA and DNA interactions.
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            LNCcation: lncRNA localization and function

            Bridges et al. discuss current knowledge, lingering questions, and emerging themes surrounding lncRNA subcellular localization and its impact on cellular functions. Subcellular localization of RNAs has gained attention in recent years as a prevalent phenomenon that influences numerous cellular processes. This is also evident for the large and relatively novel class of long noncoding RNAs (lncRNAs). Because lncRNAs are defined as RNA transcripts >200 nucleotides that do not encode protein, they are themselves the functional units, making their subcellular localization critical to their function. The discovery of tens of thousands of lncRNAs and the cumulative evidence involving them in almost every cellular activity render assessment of their subcellular localization essential to fully understanding their biology. In this review, we summarize current knowledge of lncRNA subcellular localization, factors controlling their localization, emerging themes, including the role of lncRNA isoforms and the involvement of lncRNAs in phase separation bodies, and the implications of lncRNA localization on their function and on cellular behavior. We also discuss gaps in the current knowledge as well as opportunities that these provide for novel avenues of investigation.
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              microRNA functions.

              microRNAs (miRNAs) are small noncoding RNAs that play important roles in posttranscriptional gene regulation. In animal cells, miRNAs regulate their targets by translational inhibition and mRNA destabilization. Here, we review recent work in animal models that provide insight into the diverse roles of miRNAs in vivo.
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                Author and article information

                Contributors
                URI : https://loop.frontiersin.org/people/2569586/overviewRole: Role: Role: Role: Role:
                URI : https://loop.frontiersin.org/people/2547593/overviewRole: Role: Role: Role: Role:
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                URI : https://loop.frontiersin.org/people/464189/overviewRole: Role: Role: Role: Role: Role: Role: Role: Role:
                Journal
                Front Physiol
                Front Physiol
                Front. Physiol.
                Frontiers in Physiology
                Frontiers Media S.A.
                1664-042X
                16 November 2023
                2023
                : 14
                : 1286808
                Affiliations
                [1] 1 Department of Cell Biology , Centre for Research and Advanced Studies (Cinvestav) , Mexico City, Mexico
                [2] 2 Department of Molecular Biology and Histocompatibility , “Dr. Manuel Gea González” General Hospital , Mexico City, Mexico
                [3] 3 Institute of Physiology , Meritorious Autonomous University of Puebla (BUAP) , Puebla, Mexico
                [4] 4 School of Medicine FES Iztacala , National Autonomous University of Mexico , Mexico City, Mexico
                [5] 5 Unidad de Investigación Médica en Inmunología e Infectología , Centro Médico Nacional La Raza , Instituto Mexicano del Seguro Social (IMSS) , Mexico City, Mexico
                Author notes

                Edited by: Lubica Lacinova, Slovak Academy of Sciences (SAS), Slovakia

                Reviewed by: Norbert Klugbauer, University of Freiburg, Germany

                Klaus Schicker, Medical University of Vienna, Austria

                *Correspondence: Ricardo Felix, rfelix@ 123456cinvestav.mx
                [ † ]

                Present addresses: Aida Calderón-Rivera, Department of Molecular Pathobiology, College of Dentistry, New York University, New York, NY, United States

                Natanael Zarco, Neurosurgery Department, Mayo Clinic, Jacksonville, FL, United States

                Article
                1286808
                10.3389/fphys.2023.1286808
                10687476
                38033343
                b124b934-71ff-4bd2-89a8-34c657772365
                Copyright © 2023 Muñoz-Herrera, Calderón-Rivera, Zarco, Corzo-Lopez, Leyva-Leyva, Monjaraz, Sandoval, Oviedo, González-Ramírez and Felix.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 31 August 2023
                : 07 November 2023
                Funding
                The author(s) declare financial support was received for the research, authorship, and/or publication of this article. DM-H, and AC-L received doctoral fellowships from The National Council for Science and Technology (Conacyt, Mexico).
                Categories
                Physiology
                Original Research
                Custom metadata
                Membrane Physiology and Membrane Biophysics

                Anatomy & Physiology
                cavγ2 ,cav channels,cacng2,ampa receptor,creb,stargazin,tarpγ2
                Anatomy & Physiology
                cavγ2 , cav channels, cacng2, ampa receptor, creb, stargazin, tarpγ2

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