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      Bacteroides thetaiotaomicron-derived outer membrane vesicles promote regulatory dendritic cell responses in health but not in inflammatory bowel disease

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          Abstract

          Background

          Bacteroides thetaiotaomicron (Bt) is a prominent member of the human intestinal microbiota that, like all gram-negative bacteria, naturally generates nanosized outer membrane vesicles (OMVs) which bud off from the cell surface. Importantly, OMVs can cross the intestinal epithelial barrier to mediate microbe-host cell crosstalk involving both epithelial and immune cells to help maintain intestinal homeostasis. Here, we have examined the interaction between Bt OMVs and blood or colonic mucosa-derived dendritic cells (DC) from healthy individuals and patients with Crohn’s disease (CD) or ulcerative colitis (UC).

          Results

          In healthy individuals, Bt OMVs stimulated significant ( p < 0.05) IL-10 expression by colonic DC, whereas in peripheral blood-derived DC they also stimulated significant ( p < 0.001 and p < 0.01, respectively) expression of IL-6 and the activation marker CD80. Conversely, in UC Bt OMVs were unable to elicit IL-10 expression by colonic DC. There were also reduced numbers of CD103 + DC in the colon of both UC and CD patients compared to controls, supporting a loss of regulatory DC in both diseases. Furthermore, in CD and UC, Bt OMVs elicited a significantly lower proportion of DC which expressed IL-10 ( p < 0.01 and p < 0.001, respectively) in blood compared to controls. These alterations in DC responses to Bt OMVs were seen in patients with inactive disease, and thus are indicative of intrinsic defects in immune responses to this commensal in inflammatory bowel disease (IBD).

          Conclusions

          Overall, our findings suggest a key role for OMVs generated by the commensal gut bacterium Bt in directing a balanced immune response to constituents of the microbiota locally and systemically during health which is altered in IBD patients.

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          Most cited references78

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          Structure, Function and Diversity of the Healthy Human Microbiome

          Studies of the human microbiome have revealed that even healthy individuals differ remarkably in the microbes that occupy habitats such as the gut, skin, and vagina. Much of this diversity remains unexplained, although diet, environment, host genetics, and early microbial exposure have all been implicated. Accordingly, to characterize the ecology of human-associated microbial communities, the Human Microbiome Project has analyzed the largest cohort and set of distinct, clinically relevant body habitats to date. We found the diversity and abundance of each habitat’s signature microbes to vary widely even among healthy subjects, with strong niche specialization both within and among individuals. The project encountered an estimated 81–99% of the genera, enzyme families, and community configurations occupied by the healthy Western microbiome. Metagenomic carriage of metabolic pathways was stable among individuals despite variation in community structure, and ethnic/racial background proved to be one of the strongest associations of both pathways and microbes with clinical metadata. These results thus delineate the range of structural and functional configurations normal in the microbial communities of a healthy population, enabling future characterization of the epidemiology, ecology, and translational applications of the human microbiome.
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            Worldwide incidence and prevalence of inflammatory bowel disease in the 21st century: a systematic review of population-based studies.

            Inflammatory bowel disease is a global disease in the 21st century. We aimed to assess the changing incidence and prevalence of inflammatory bowel disease around the world.
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              Revised Estimates for the Number of Human and Bacteria Cells in the Body

              Reported values in the literature on the number of cells in the body differ by orders of magnitude and are very seldom supported by any measurements or calculations. Here, we integrate the most up-to-date information on the number of human and bacterial cells in the body. We estimate the total number of bacteria in the 70 kg "reference man" to be 3.8·1013. For human cells, we identify the dominant role of the hematopoietic lineage to the total count (≈90%) and revise past estimates to 3.0·1013 human cells. Our analysis also updates the widely-cited 10:1 ratio, showing that the number of bacteria in the body is actually of the same order as the number of human cells, and their total mass is about 0.2 kg.
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                Author and article information

                Contributors
                l.durant@imperial.ac.uk
                regis.stentz@quadram.ac.uk
                a.noble@imperial.ac.uk
                johanne.brooks@nnuh.nhs.uk
                gicheva.nadezhda@gmail.com
                dreddi@parkinsons.org.uk
                matthewoconnor90@gmail.com
                lesley.hoyles@ntu.ac.uk
                a.l.mccartney@reading.ac.uk
                r.man@imperial.ac.uk
                e.pring17@imperial.ac.uk
                stella.dilke@nhs.net
                philip.hendy@nhs.net
                jonathansegal1@nhs.net
                dennis.lim1@nhs.net
                rmisra@nhs.net
                ailsa.hart@nhs.net
                naila.arebi@imperial.ac.uk
                Simon.Carding@quadram.ac.uk
                s.knight@imperial.ac.uk
                Journal
                Microbiome
                Microbiome
                Microbiome
                BioMed Central (London )
                2049-2618
                8 June 2020
                8 June 2020
                2020
                : 8
                : 88
                Affiliations
                [1 ]GRID grid.7445.2, ISNI 0000 0001 2113 8111, Antigen Presentation Research Group, , Imperial College London, Northwick Park & St. Mark’s Hospital Campus, ; Watford Rd, Harrow, Greater London HA1 3UJ UK
                [2 ]GRID grid.40368.39, ISNI 0000 0000 9347 0159, Gut Microbes and Health Research Programme, , Quadram Institute Bioscience, ; Norwich, NR4 7UQ UK
                [3 ]GRID grid.8273.e, ISNI 0000 0001 1092 7967, Norwich Medical School, , University of East Anglia, ; Norwich, NR4 7TJ UK
                [4 ]GRID grid.12361.37, ISNI 0000 0001 0727 0669, Department of Biosciences, , Nottingham Trent University, Clifton Campus, ; Nottingham, NG11 8NS UK
                [5 ]GRID grid.9435.b, ISNI 0000 0004 0457 9566, Food Microbial Sciences Unit, , University of Reading, ; Whiteknights, Reading, RG6 6UR UK
                [6 ]GRID grid.439803.5, St Mark’s Hospital, , London North West University Healthcare NHS Trust, ; Harrow, Greater London HA1 3UJ UK
                Author information
                http://orcid.org/0000-0002-5068-1479
                Article
                868
                10.1186/s40168-020-00868-z
                7282036
                32513301
                b459c458-d95b-4608-a3df-a79db0557292
                © The Author(s) 2020

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 17 December 2019
                : 13 May 2020
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100000268, Biotechnology and Biological Sciences Research Council;
                Award ID: BB/J004529/1
                Award ID: BB/R012490/1
                Award ID: BB/J004529/1
                Award ID: BB/R012490/1
                Award ID: BB/J004529/1
                Award ID: BB/J004529/1
                Award ID: BB/J004529/1
                Award ID: BB/R012490/1
                Award ID: BB/R012490/1
                Award ID: BB/J004529/1
                Award ID: BB/R012490/1
                Award ID: BB/J004529/1
                Award ID: BB/R012490/1
                Award ID: BB/J004529/1
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100000265, Medical Research Council;
                Award ID: MR/L01632X/1
                Award Recipient :
                Funded by: London North West University Healthcare NHS Trust R&D
                Categories
                Research
                Custom metadata
                © The Author(s) 2020

                dendritic cells,outer membrane vesicles,bacteroides thetaiotaomicron,interleukin-10,inflammatory bowel disease

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