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      Is Open Access

      Recent advances in small molecular modulators targeting histone deacetylase 6

      review-article
      1 , * , 1 ,
      Future Drug Discovery
      Newlands Press Ltd
      acetylation, cancer, chimeric inhibitor, degradation, epigenetic, HDAC6, HDAC inhibitor, multi-target drug, neurodegenerative disease, PROTAC

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          Abstract

          Histone deacetylase 6 (HDAC6) is a unique isozyme in the HDAC family with various distinguished characters. HDAC6 is predominantly localized in the cytoplasm and has several specific nonhistone substrates, such as α-tubulin, cortactin, Hsp90, tau and peroxiredoxins. Accumulating evidence reveals that targeting HDAC6 may serve as a promising therapeutic strategy for the treatment of cancers, neurological disorders and immune diseases, making the development of HDAC6 inhibitors particularly attractive. Recently, multitarget drug design and proteolysis targeting chimera technology have also been applied in the discovery of novel small molecular modulators targeting HDAC6. In this review, we briefly describe the structural features and biological functions of HDAC6 and discuss the recent advances in HDAC6 modulators, including selective inhibitors, chimeric inhibitors and proteolysis targeting chimeras for multiple therapeutic purposes.

          Most cited references147

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          The HSP90 chaperone machinery

          The heat shock protein 90 (HSP90) chaperone machinery is a key regulator of proteostasis. Recent progress has shed light on the interactions of HSP90 with its clients and co-chaperones, and on their functional implications. This opens up new avenues for the development of drugs that target HSP90, which could be valuable for the treatment of cancers and protein-misfolding diseases.
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            Lenalidomide causes selective degradation of IKZF1 and IKZF3 in multiple myeloma cells.

            Lenalidomide is a drug with clinical efficacy in multiple myeloma and other B cell neoplasms, but its mechanism of action is unknown. Using quantitative proteomics, we found that lenalidomide causes selective ubiquitination and degradation of two lymphoid transcription factors, IKZF1 and IKZF3, by the CRBN-CRL4 ubiquitin ligase. IKZF1 and IKZF3 are essential transcription factors in multiple myeloma. A single amino acid substitution of IKZF3 conferred resistance to lenalidomide-induced degradation and rescued lenalidomide-induced inhibition of cell growth. Similarly, we found that lenalidomide-induced interleukin-2 production in T cells is due to depletion of IKZF1 and IKZF3. These findings reveal a previously unknown mechanism of action for a therapeutic agent: alteration of the activity of an E3 ubiquitin ligase, leading to selective degradation of specific targets.
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              Structural basis of PROTAC cooperative recognition for selective protein degradation

              Inducing macromolecular interactions with small molecules to activate cellular signaling is a challenging goal. PROTACs (proteolysis-targeting chimaeras) are bifunctional molecules that recruit a target protein in proximity to an E3 ubiquitin ligase to trigger protein degradation. Structural elucidation of the key ternary ligase:PROTAC:target species and how this impacts target degradation selectivity remains elusive. We solved the crystal structure of Brd4-degrader MZ1 in complex with human VHL and the Brd4 bromodomain (Brd4BD2). The ligand folds into itself to allow formation of specific intermolecular interactions in the ternary complex. Isothermal titration calorimetry studies, supported by surface mutagenesis and proximity assays, are consistent with pronounced cooperative formation of ternary complexes with Brd4BD2. Structure-based-designed compound AT1 exhibits highly selective depletion of Brd4 in cells. Our results elucidate how PROTAC-induced de novo contacts dictate preferential recruitment of a target protein into a stable and cooperative complex with an E3 ligase for selective degradation.
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                Author and article information

                Journal
                FDD
                Future Drug Discovery
                Future Drug. Discov.
                Future Drug Discovery
                Newlands Press Ltd (London, UK )
                2631-3316
                26 October 2020
                October 2020
                : 2
                : 4
                : FDD53
                Affiliations
                1Department of Medicinal Chemistry, College of Pharmacy, University of Florida, 1333 Center Drive, Gainesville, FL 32610, USA
                Author notes
                [* ]Author for correspondence: Xuan.zhang@ 123456cop.ufl.edu
                Author information
                https://orcid.org/0000-0002-2679-0800
                https://orcid.org/0000-0001-6062-6708
                Article
                10.4155/fdd-2020-0023
                c0c7d1e3-3876-4b0d-917f-73f3621405ca
                © 2020 Xuan Zhang

                This work is licensed under the Attribution-NonCommercial-NoDerivatives 4.0 Unported License

                History
                : 08 August 2020
                : 09 October 2020
                : 26 October 2020
                Page count
                Pages: 23
                Funding
                Funded by: UFHCC MOO Research Grant
                Award ID: P0157383
                Categories
                Review

                Biochemistry,Molecular medicine,Pharmaceutical chemistry,Bioinformatics & Computational biology,Biotechnology,Pharmacology & Pharmaceutical medicine
                acetylation,PROTAC,neurodegenerative disease,cancer,chimeric inhibitor,degradation,epigenetic,HDAC6,HDAC inhibitor,multi-target drug

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