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      The Jurassic rise of squamates as supported by lepidosaur disparity and evolutionary rates

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          Abstract

          The squamates (lizards, snakes, and relatives) today comprise more than 10,000 species, and yet their sister group, the Rhynchocephalia, is represented by a single species today, the tuatara. The explosion in squamate diversity has been tracked back to the Cretaceous Terrestrial Revolution, 100 million years ago (Ma), the time when flowering plants began their takeover of terrestrial ecosystems, associated with diversification of coevolving insects and insect-eating predators such as lizards, birds, and mammals. Squamates arose much earlier, but their long pre-Cretaceous history of some 150 million years (Myr) is documented by sparse fossils. Here, we provide evidence for an initial radiation of squamate morphology in the Middle and Late Jurassic (174–145 Ma), and show that they established their key ecological roles much earlier than had been assumed, and they have not changed them much since.

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            phytools: an R package for phylogenetic comparative biology (and other things)

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              TNT version 1.5, including a full implementation of phylogenetic morphometrics

              Version 1.5 of the computer program TNT completely integrates landmark data into phylogenetic analysis. Landmark data consist of coordinates (in two or three dimensions) for the terminal taxa; TNT reconstructs shapes for the internal nodes such that the difference between ancestor and descendant shapes for all tree branches sums up to a minimum; this sum is used as tree score. Landmark data can be analysed alone or in combination with standard characters; all the applicable commands and options in TNT can be used transparently after reading a landmark data set. The program continues implementing all the types of analyses in former versions, including discrete and continuous characters (which can now be read at any scale, and automatically rescaled by TNT). Using algorithms described in this paper, searches for landmark data can be made tens to hundreds of times faster than it was possible before (from T to 3T times faster, where T is the number of taxa), thus making phylogenetic analysis of landmarks feasible even on standard personal computers.
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                Author and article information

                Contributors
                Role: Reviewing Editor
                Role: Senior Editor
                Journal
                eLife
                Elife
                eLife
                eLife
                eLife Sciences Publications, Ltd
                2050-084X
                03 May 2022
                2022
                : 11
                : e66511
                Affiliations
                [1 ] Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona ( https://ror.org/052g8jq94) Cerdanyola del Vallès Spain
                [2 ] School of Earth Sciences, University of Bristol ( https://ror.org/0524sp257) Bristol United Kingdom
                Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences ( https://ror.org/0000pmw59) China
                Pennsylvania State University ( https://ror.org/04p491231) United States
                Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences ( https://ror.org/0000pmw59) China
                Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences ( https://ror.org/0000pmw59) China
                Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences ( https://ror.org/0000pmw59) China
                Author information
                https://orcid.org/0000-0003-4416-4560
                https://orcid.org/0000-0001-7358-1051
                https://orcid.org/0000-0002-9660-4161
                https://orcid.org/0000-0002-4323-1824
                Article
                66511
                10.7554/eLife.66511
                9064307
                35502582
                c14e3dca-03f6-4b26-8c84-723e952eeefb
                © 2022, Bolet et al

                This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

                History
                : 13 January 2021
                : 24 March 2022
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100000288, Royal Society;
                Award ID: NF170464
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100014440, Ministerio de Ciencia, Innovación y Universidades;
                Award ID: IJC2018-037685-I
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100000780, European Commission;
                Award ID: ERC 788203
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100000270, Natural Environment Research Council;
                Award ID: NE/I027630/1
                Award Recipient :
                The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
                Categories
                Research Article
                Evolutionary Biology
                Custom metadata
                Evidence for a largely unexplored radiation of squamates (lizards, snakes, and amphisbaenians) in the Middle to Late Jurassic is revealed by analyses of morphospace expansion, disparity, and evolutionary rates.

                Life sciences
                reptilia,lepidosauria,squamata,disparity,macroevolution,fossil record,other
                Life sciences
                reptilia, lepidosauria, squamata, disparity, macroevolution, fossil record, other

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