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      Automated in vivo drug screen in zebrafish identifies synapse-stabilising drugs with relevance to spinal muscular atrophy

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          ABSTRACT

          Synapses are particularly vulnerable in many neurodegenerative diseases and often the first to degenerate, for example in the motor neuron disease spinal muscular atrophy (SMA). Compounds that can counteract synaptic destabilisation are rare. Here, we describe an automated screening paradigm in zebrafish for small-molecule compounds that stabilize the neuromuscular synapse in vivo. We make use of a mutant for the axonal C-type lectin chondrolectin (chodl ), one of the main genes dysregulated in SMA. In chodl −/− mutants, neuromuscular synapses that are formed at the first synaptic site by growing axons are not fully mature, causing axons to stall, thereby impeding further axon growth beyond that synaptic site. This makes axon length a convenient read-out for synapse stability. We screened 982 small-molecule compounds in chodl chodl −/− mutants and found four that strongly rescued motor axon length. Aberrant presynaptic neuromuscular synapse morphology was also corrected. The most-effective compound, the adenosine uptake inhibitor drug dipyridamole, also rescued axon growth defects in the UBA1-dependent zebrafish model of SMA. Hence, we describe an automated screening pipeline that can detect compounds with relevance to SMA. This versatile platform can be used for drug and genetic screens, with wider relevance to synapse formation and stabilisation.

          Abstract

          Summary: We report an automated and high-throughput screening platform to identify compounds relevant to motor neuron disease using younger, less-pigmented zebrafish embryos.

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          SMN deficiency causes tissue-specific perturbations in the repertoire of snRNAs and widespread defects in splicing.

          The survival of motor neurons (SMN) protein is essential for the biogenesis of small nuclear RNA (snRNA)-ribonucleoproteins (snRNPs), the major components of the pre-mRNA splicing machinery. Though it is ubiquitously expressed, SMN deficiency causes the motor neuron degenerative disease spinal muscular atrophy (SMA). We show here that SMN deficiency, similar to that which occurs in severe SMA, has unexpected cell type-specific effects on the repertoire of snRNAs and mRNAs. It alters the stoichiometry of snRNAs and causes widespread pre-mRNA splicing defects in numerous transcripts of diverse genes, preferentially those containing a large number of introns, in SMN-deficient mouse tissues. These findings reveal a key role for the SMN complex in RNA metabolism and in splicing regulation and indicate that SMA is a general splicing disease that is not restricted to motor neurons.
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            Microtubule stabilization reduces scarring and causes axon regeneration after spinal cord injury.

            Hypertrophic scarring and poor intrinsic axon growth capacity constitute major obstacles for spinal cord repair. These processes are tightly regulated by microtubule dynamics. Here, moderate microtubule stabilization decreased scar formation after spinal cord injury in rodents through various cellular mechanisms, including dampening of transforming growth factor-β signaling. It prevented accumulation of chondroitin sulfate proteoglycans and rendered the lesion site permissive for axon regeneration of growth-competent sensory neurons. Microtubule stabilization also promoted growth of central nervous system axons of the Raphe-spinal tract and led to functional improvement. Thus, microtubule stabilization reduces fibrotic scarring and enhances the capacity of axons to grow.
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              Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images.

              For the investigation of the molecular mechanisms involved in neurite outgrowth and differentiation, accurate and reproducible segmentation and quantification of neuronal processes are a prerequisite. To facilitate this task, we developed a semiautomatic neurite tracing technique. This article describes the design and validation of the technique. The technique was compared to fully manual delineation. Four observers repeatedly traced selected neurites in 20 fluorescence microscopy images of cells in culture, using both methods. Accuracy and reproducibility were determined by comparing the tracings to high-resolution reference tracings, using two error measures. Labor intensiveness was measured in numbers of mouse clicks required. The significance of the results was determined by a Student t-test and by analysis of variance. Both methods slightly underestimated the true neurite length, but the differences were not unanimously significant. The average deviation from the true neurite centerline was a factor 2.6 smaller with the developed technique compared to fully manual tracing. Intraobserver variability in the respective measures was reduced by a factor 6.0 and 23.2. Interobserver variability was reduced by a factor 2.4 and 8.8, respectively, and labor intensiveness by a factor 3.3. Providing similar accuracy in measuring neurite length, significantly improved accuracy in neurite centerline extraction, and significantly improved reproducibility and reduced labor intensiveness, the developed technique may replace fully manual tracing methods. Copyright 2004 Wiley-Liss, Inc.
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                Author and article information

                Journal
                Dis Model Mech
                Dis Model Mech
                DMM
                dmm
                Disease Models & Mechanisms
                The Company of Biologists Ltd
                1754-8403
                1754-8411
                1 April 2021
                26 April 2021
                26 April 2021
                : 14
                : 4
                : dmm047761
                Affiliations
                [1 ]Centre for Discovery Brain Sciences, University of Edinburgh , The Chancellor's Building, 49 Little France Crescent, Edinburgh EH16 4SB
                [2 ]Euan MacDonald Centre for Motor Neurone Disease Research, University of Edinburgh , EH16 4SB Edinburgh, UK
                [3 ]Cancer Research UK Edinburgh Centre, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, EH4 2XR Edinburgh , UK
                Author notes
                [*]

                Present address: Department of Biological Sciences, National University of Singapore, Singapore.

                [‡]

                Present address: Bonn-Aachen International Center for Information Technology, University of Bonn, Endenicher Allee 19a, 53115, Bonn, Germany.

                [ §]

                Senior authors

                []Author for correspondence ( AnaMaria.Oprisoreanu@ 123456ed.ac.uk )

                Handling Editor: David M. Tobin

                Author information
                http://orcid.org/0000-0002-9409-0830
                http://orcid.org/0000-0003-3670-5881
                http://orcid.org/0000-0002-4700-5808
                http://orcid.org/0000-0001-5541-9747
                http://orcid.org/0000-0002-0306-5577
                http://orcid.org/0000-0002-9501-6165
                http://orcid.org/0000-0003-2578-0819
                Article
                DMM047761
                10.1242/dmm.047761
                8106959
                33973627
                c417fe2c-a30d-49fc-b08f-9519fcbdc076
                © 2021. Published by The Company of Biologists Ltd

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

                History
                : 11 October 2020
                : 10 March 2021
                Funding
                Funded by: Spinal Muscular Atrophy UK, http://dx.doi.org/10.13039/100011708;
                Funded by: Motor Neurone Disease Association, http://dx.doi.org/10.13039/501100000406;
                Funded by: Medical Research Council, http://dx.doi.org/10.13039/501100000265;
                Categories
                Research Article

                Molecular medicine
                drug discovery,phenotypic screening,chondrolectin,vast,zebrafish,synapse stabilization

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