Mutation rate estimation for 15 autosomal STR loci in a large population from Mainland China

Abstract

STR, short tandem repeats, are well known as a type of powerful genetic marker and widely used in studying human population genetics. Compared with the conventional genetic markers, the mutation rate of STR is higher. Additionally, the mutations of STR loci do not lead to genetic inconsistencies between the genotypes of parents and children; therefore, the analysis of STR mutation is more suited to assess the population mutation. In this study, we focused on 15 autosomal STR loci. DNA samples from a total of 42,416 unrelated healthy individuals (19,037 trios) from the population of Mainland China collected between Jan 2012 and May 2014 were successfully investigated. In our study, the allele frequencies, paternal mutation rates, maternal mutation rates and average mutation rates were detected. Furthermore, we also investigated the relationship between paternal ages, maternal ages, area, the time of pregnancy and average mutation rate. We found that the paternal mutation rate was higher than the maternal mutation rate and the paternal, maternal, and average mutation rates had a positive correlation with paternal age, maternal age and the time of pregnancy respectively. Additionally, the average mutation rate of coastal areas was higher than that of inland areas.

Highlights

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  15 autosomal STR loci were analyzed in a large scale population in Mainland China.

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  With increases of repeat units the event of loss is more than that of gain.

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  The paternal mutation rate is higher than the maternal mutation rate.

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  There is a positive correlation between mutation rates and age and pregnancy time.

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  The average mutation rates of coastal areas are higher than that of inland areas.