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      Predicting lymphatic filariasis transmission and elimination dynamics using a multi-model ensemble framework

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          Highlights

          • No single mathematical model captures all features of parasite transmission dynamics.

          • Multi-model ensemble modelling can overcome biases of single models.

          • A multi-model ensemble of three lymphatic filariasis models is proposed and evaluated.

          • The multi-model ensemble outperformed the single models in predicting infection.

          • The ensemble approach may improve use of models to inform disease control policy.

          Abstract

          Mathematical models of parasite transmission provide powerful tools for assessing the impacts of interventions. Owing to complexity and uncertainty, no single model may capture all features of transmission and elimination dynamics. Multi-model ensemble modelling offers a framework to help overcome biases of single models. We report on the development of a first multi-model ensemble of three lymphatic filariasis (LF) models (EPIFIL, LYMFASIM, and TRANSFIL), and evaluate its predictive performance in comparison with that of the constituents using calibration and validation data from three case study sites, one each from the three major LF endemic regions: Africa, Southeast Asia and Papua New Guinea (PNG). We assessed the performance of the respective models for predicting the outcomes of annual MDA strategies for various baseline scenarios thought to exemplify the current endemic conditions in the three regions. The results show that the constructed multi-model ensemble outperformed the single models when evaluated across all sites. Single models that best fitted calibration data tended to do less well in simulating the out-of-sample, or validation, intervention data. Scenario modelling results demonstrate that the multi-model ensemble is able to compensate for variance between single models in order to produce more plausible predictions of intervention impacts. Our results highlight the value of an ensemble approach to modelling parasite control dynamics. However, its optimal use will require further methodological improvements as well as consideration of the organizational mechanisms required to ensure that modelling results and data are shared effectively between all stakeholders.

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          Most cited references54

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          Using Bayesian Model Averaging to Calibrate Forecast Ensembles

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            Equifinality, data assimilation, and uncertainty estimation in mechanistic modelling of complex environmental systems using the GLUE methodology

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              Modeling targeted layered containment of an influenza pandemic in the United States.

              Planning a response to an outbreak of a pandemic strain of influenza is a high public health priority. Three research groups using different individual-based, stochastic simulation models have examined the consequences of intervention strategies chosen in consultation with U.S. public health workers. The first goal is to simulate the effectiveness of a set of potentially feasible intervention strategies. Combinations called targeted layered containment (TLC) of influenza antiviral treatment and prophylaxis and nonpharmaceutical interventions of quarantine, isolation, school closure, community social distancing, and workplace social distancing are considered. The second goal is to examine the robustness of the results to model assumptions. The comparisons focus on a pandemic outbreak in a population similar to that of Chicago, with approximately 8.6 million people. The simulations suggest that at the expected transmissibility of a pandemic strain, timely implementation of a combination of targeted household antiviral prophylaxis, and social distancing measures could substantially lower the illness attack rate before a highly efficacious vaccine could become available. Timely initiation of measures and school closure play important roles. Because of the current lack of data on which to base such models, further field research is recommended to learn more about the sources of transmission and the effectiveness of social distancing measures in reducing influenza transmission.
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                Author and article information

                Contributors
                Journal
                Epidemics
                Epidemics
                Epidemics
                Elsevier
                1755-4365
                1878-0067
                1 March 2017
                March 2017
                : 18
                : 16-28
                Affiliations
                [a ]Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA
                [b ]School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry CV4 7AL, UK
                [c ]Department of Public Health, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands
                [d ]Vector Control Research Centre (Indian Council of Medical Research), Indira Nagar, Pondicherry 650 006, India
                [e ]Mathematics Institute, University of Warwick, Gibbet Hill Road, CV4 7AL Coventry, UK
                Author notes
                [* ]Corresponding author at: 349 Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556, USA. emichael@ 123456nd.edu
                Article
                S1755-4365(16)30061-5
                10.1016/j.epidem.2017.02.006
                5340857
                28279452
                c55c4080-c88a-4f1b-95c5-953b4f6deef9
                © 2017 The Authors

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

                History
                : 9 December 2016
                : 1 February 2017
                : 1 February 2017
                Categories
                Article

                Public health
                neglected tropical disease,lymphatic filariasis,macroparasite dynamics,multi-model ensemble,model calibration and validation,control dynamics

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