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      Reversible histone glycation is associated with disease-related changes in chromatin architecture

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          Abstract

          Cellular proteins continuously undergo non-enzymatic covalent modifications (NECMs) that accumulate under normal physiological conditions and are stimulated by changes in the cellular microenvironment. Glycation, the hallmark of diabetes, is a prevalent NECM associated with an array of pathologies. Histone proteins are particularly susceptible to NECMs due to their long half-lives and nucleophilic disordered tails that undergo extensive regulatory modifications; however, histone NECMs remain poorly understood. Here we perform a detailed analysis of histone glycation in vitro and in vivo and find it has global ramifications on histone enzymatic PTMs, the assembly and stability of nucleosomes, and chromatin architecture. Importantly, we identify a physiologic regulation mechanism, the enzyme DJ-1, which functions as a potent histone deglycase. Finally, we detect intense histone glycation and DJ-1 overexpression in breast cancer tumors. Collectively, our results suggest an additional mechanism for cellular metabolic damage through epigenetic perturbation, with implications in pathogenesis.

          Abstract

          Proteins continuously undergo non-enzymatic modifications such as glycation, which accumulate under physiological conditions but can be enhanced in disease. Here the authors characterise histone glycation, provide evidence that it affects chromatin, particularly in breast cancer, and identify DJ-1 as a deglycase.

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          Most cited references45

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          Extraction, purification and analysis of histones.

          Histone proteins are the major protein components of chromatin, the physiologically relevant form of the genome (or epigenome) in all eukaryotic cells. Chromatin is the substrate of many biological processes, such as gene regulation and transcription, replication, mitosis and apoptosis. Since histones are extensively post-translationally modified, the identification of these covalent marks on canonical and variant histones is crucial for the understanding of their biological significance. Many different biochemical techniques have been developed to purify and separate histone proteins. Here, we present standard protocols for acid extraction and salt extraction of histones from chromatin; separation of extracted histones by reversed-phase HPLC; analysis of histones and their specific post-translational modification profiles by acid urea (AU) gel electrophoresis and the additional separation of non-canonical histone variants by triton AU(TAU) and 2D TAU electrophoresis; and immunoblotting of isolated histone proteins with modification-specific antibodies.
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            Formation of glyoxal, methylglyoxal and 3-deoxyglucosone in the glycation of proteins by glucose.

            The glycation of proteins by glucose has been linked to the development of diabetic complications and other diseases. Early glycation is thought to involve the reaction of glucose with N-terminal and lysyl side chain amino groups to form Schiff's base and fructosamine adducts. The formation of the alpha-oxoaldehydes, glyoxal, methylglyoxal and 3-deoxyglucosone, in early glycation was investigated. Glucose (50 mM) degraded slowly at pH 7.4 and 37 degrees C to form glyoxal, methylglyoxal and 3-deoxyglucosone throughout a 3-week incubation period. Addition of t-BOC-lysine and human serum albumin increased the rate of formation of alpha-oxoaldehydes - except glyoxal and methylglyoxal concentrations were low with albumin, as expected from the high reactivity of glyoxal and methylglyoxal with arginine residues. The degradation of fructosyl-lysine also formed glyoxal, methylglyoxal and 3-deoxyglucosone. alpha-Oxoaldehyde formation was dependent on the concentration of phosphate buffer and availability of trace metal ions. This suggests that alpha-oxoaldehydes were formed in early glycation from the degradation of glucose and Schiff's base adduct. Since alpha-oxoaldehydes are important precursors of advanced glycation adducts, these adducts may be formed from early and advanced glycation processes. Short periods of hyperglycaemia, as occur in impaired glucose tolerance, may be sufficient to increase the concentrations of alpha-oxoaldehydes in vivo.
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              Glucose-regulated phosphorylation of TET2 by AMPK reveals a pathway linking diabetes to cancer

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                Author and article information

                Contributors
                davidshy@mskcc.org
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                20 March 2019
                20 March 2019
                2019
                : 10
                : 1289
                Affiliations
                [1 ]ISNI 0000 0001 2171 9952, GRID grid.51462.34, Chemical Biology Program, , Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, ; New York, NY 10065 USA
                [2 ]Tri-Institutional Training Program in Computational Biology and Medicine, New York, NY 10065 USA
                [3 ]ISNI 0000 0001 2166 1519, GRID grid.134907.8, Laboratory of Nanoscale Biophysics and Biochemistry, , Rockefeller University, ; New York, NY 10065 USA
                [4 ]Tri-institutional PhD Program in Chemical Biology, New York, NY 10065 USA
                [5 ]ISNI 0000 0001 2171 9952, GRID grid.51462.34, Human Oncology & Pathogenesis Program, , Memorial Sloan Kettering Cancer Center, ; New York, NY USA
                [6 ]ISNI 000000041936877X, GRID grid.5386.8, Department of Pharmacology, , Weill Cornell Medical College, ; New York, NY 10065 USA
                [7 ]ISNI 000000041936877X, GRID grid.5386.8, Department of Physiology, Biophysics and Systems Biology, , Weill Cornell Medical College, ; New York, NY 10065 USA
                Author information
                http://orcid.org/0000-0002-8397-3507
                http://orcid.org/0000-0001-6340-8765
                http://orcid.org/0000-0002-2700-6475
                http://orcid.org/0000-0003-4532-8053
                Article
                9192
                10.1038/s41467-019-09192-z
                6426841
                30894531
                c9247036-a153-4f64-9cdf-fb61ddf0b5f7
                © The Author(s) 2019

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 13 August 2018
                : 22 February 2019
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