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      COVID-19: Challenges to GIS with Big Data

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          Highlights

          • GIS with big data provides geospatial information to fight COVID-19.

          • Big data showed power on epidemic transmission analysis and prevention decision making support.

          • Challenges still continue in data aggregation, knowledge discovery, and dynamic expression.

          Abstract

          The outbreak of the 2019 novel coronavirus disease (COVID-19) has caused more than 100,000 people infected and thousands of deaths. Currently, the number of infections and deaths is still increasing rapidly. COVID-19 seriously threatens human health, production, life, social functioning and international relations. In the fight against COVID-19, Geographic Information Systems (GIS) and big data technologies have played an important role in many aspects, including the rapid aggregation of multi-source big data, rapid visualization of epidemic information, spatial tracking of confirmed cases, prediction of regional transmission, spatial segmentation of the epidemic risk and prevention level, balancing and management of the supply and demand of material resources, and social-emotional guidance and panic elimination, which provided solid spatial information support for decision-making, measures formulation, and effectiveness assessment of COVID-19 prevention and control. GIS has developed and matured relatively quickly and has a complete technological route for data preparation, platform construction, model construction, and map production. However, for the struggle against the widespread epidemic, the main challenge is finding strategies to adjust traditional technical methods and improve speed and accuracy of information provision for social management. At the data level, in the era of big data, data no longer come mainly from the government but are gathered from more diverse enterprises. As a result, the use of GIS faces difficulties in data acquisition and the integration of heterogeneous data, which requires governments, businesses, and academic institutions to jointly promote the formulation of relevant policies. At the technical level, spatial analysis methods for big data are in the ascendancy. Currently and for a long time in the future, the development of GIS should be strengthened to form a data-driven system for rapid knowledge acquisition, which signifies that GIS should be used to reinforce the social operation parameterization of models and methods, especially when providing support for social management.

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          Mathematical models of infectious disease transmission

          Key Points Mathematical analysis and modelling is an important part of infectious disease epidemiology. Application of mathematical models to disease surveillance data can be used to address both scientific hypotheses and disease-control policy questions. The link between the biology of an infectious disease, the process of transmission and the mathematics that are used to describe them is not always clear in published research. An understanding of this link is needed to critically interpret these publications and the policy recommendations and scientific conclusions that are contained within them. This Review describes the biology of the transmission process and how it can be represented mathematically. It shows how this representation leads to a mathematical model of infectious disease epidemics as a function of underlying disease natural history and ecology. The mathematical description of disease epidemics immediately leads to several useful results, including the expected size of an epidemic and the critical level that is needed for an intervention to achieve effective disease control. Statistical methods to fit mathematical models of disease surveillance data are outlined and the fundamental importance of the concept of likelihood is highlighted. The fit of mathematical models to surveillance data can provide estimates of key model parameters that determine a disease's natural history or the impact of an intervention, and are crucially dependent on the appropriate choice of mathematical model. The Review ends with four outstanding challenges in mathematical infectious disease epidemiology that are essential for progress in our understanding of the ecology and evolution of infectious diseases. This understanding could lead to improvements in disease control.
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            Crowdsourcing geographic information for disaster response: a research frontier

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              The association between domestic train transportation and novel coronavirus (2019-nCoV) outbreak in China from 2019 to 2020: A data-driven correlational report

              To the Editor The atypical pneumonia case, caused by a novel coronavirus (2019-nCoV), was first identified and reported in Wuhan, China in December, 2019 [1]. As of January 21, 2020 (11:59 a.m., GMT+8), there have been 215 cases of 2019-nCoV infections confirmed in mainland China. There were 198 domestic cases in Wuhan including 4 deaths, and 17 cases identified outside Wuhan including 8 in Shenzhen, 5 in Beijing, 2 in Shanghai and 2 in other places. The 2019-nCoV cases were also reported in Thailand, Japan and Republic of Korea, and all these cases were exported from Wuhan China, see WHO news release https://www.who.int/csr/don/en/from January 14–20, 2020. The first case outside Wuhan was confirmed in Shenzhen on January 3, 2020. Then, many major Chinese cities reported events of ‘imported 2019-nCoV cases’, thereafter, including Beijing and Shanghai. The outbreak is still on-going. And a recently published preprint by Imai et al. estimated that a total of 1723 (95%CI: 427–4471) cases of 2019-nCoV infections in Wuhan had onset of symptoms by January 12, 2020 [2]. Inspired by Ref. [3], which indicated the likelihood of travel related risks of 2019-nCoV spreading, we suspected the spread of infections could be associated with the domestic transportations in mainland China. Thus, we examine and explore the association between load of domestic passengers from Wuhan and the number of 2019-nCoV cases confirmed in different cities. The daily numbers of domestic passengers by means of transportation, i.e., car (road), train and flight, were obtained from the location-based services database of Tencent company from January 2016 to June 2019, see https://heat.qq.com/document.php (in Chinese). We calculated the daily average number of passengers from Wuhan to six selected major cities, including Beijing, Shanghai, Guangzhou, Shenzhen, Chengdu and Chongqing, from December 16 to January 15 of the next year. The location of the selected six major cities are shown in Fig. 1 (A). Since the most recent transportation dataset, i.e., 2019–20, was not yet available, we used the data of the same period in the past three years, i.e., 2016–19, as the proxy in the analysis. The association can be constructed as in Eqn (1). (1)E(case) = α∙period + β∙log(passenger). Fig. 1 The map of major cities with imported nCoV cases and the its regression fitting results against train transportation. Panel (A) shows the locations of the major cities with nCoV cases as of January 20, 2020. The red star represents Beijing, gold diamond represents Wuhan, which is believed to be the source of nCoV, and Shanghai, Guangzhou, Shenzhen, Chengdu and Chongqing are indicated by the green circles. The blue curves are the Yellow river (upper) and Yangtze river (lower). Panel (B) shows the daily number of passengers by train versus the total number of imported nCoV cases in each city. The observed data are in blue, the fitted regression model is the red line, and the 95%CI is shown as the red dashed line. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.) Fig. 1 Here, the function E(∙) is the expectation. The ‘period’ is a dummy variable accounting for the difference in the passenger loads in the different periods of time. Thus, the α represents the effect of different period, which accounts for a period-varying interception term. The β is the regression coefficient to quantify the association. The ‘passenger’ is the daily number of domestic passengers, and it is in logarithm form with base of 10 in the regression model. Hence, the β can be interpreted as the number of imported 2019-nCoV cases associated with 10-fold increase in the daily number of passengers in average. We estimated and tested the βs for three means of transportation, i.e., car, train and flight. The p-value less than 0.05 is considered as statistical significance. We found strong and significant association between travel by train and the number of 2019- nCoV cases, whereas the associations of the other two means of transportation failed to reach statistical significance, see Table 1 . We estimated that 10-fold increase in the number of train passengers from Wuhan is likely to associated with 8.27, 95%CI: (0.35, 16.18), increase in the number of imported cases, see Fig. 1(B). As for sensitivity analysis, by slightly varying the time period of the transportation data, currently it is from December 16 to January 15 of the next year, this association still holds strongly and significantly. We remark that the estimates of β could be different as the 2019- nCoV outbreak situation updating, e.g., more reports on the imported cases in other cities, but the statistical significance of this relationship is unlikely to vary. Although this is a data-driven analysis, our findings suggest that disease control and prevention measures are preferred in the travelling procedure by trains. We remark that the analysis was conducted based on the epidemic data at early outbreak, and further investigation can be improved from more detailed datasets. Table 1 The summary table of the estimated association between transportation and number of imported nCoV cases. The interpretation of the regression coefficient (‘coeff.’) is the number of imported nCoV cases associated with 10-fold increase in daily number of passengers in average. Table 1 Transportation Proportion coeff. (per 10-fold increase) R-squared train 68.72% 8.27 (0.35, 16.18), p = 0.042 0.26 car 11.85% 5.7 (−6.09, 17.5), p = 0.317 0.07 flight 19.42% 3.61 (−2.22, 9.44), p = 0.206 0.11 Note: the ‘proportion’ is percentage of the transportation of interest in all transportations. Ethics approval and consent to participate The ethical approval or individual consent was not applicable. Availability of data and materials All data and materials used in this work were publicly available. Consent for publication Not applicable. Funding This work was not funded. Disclaimer The funding agencies had no role in the design and conduct of the study; collection, management, analysis, and interpretation of the data; preparation, review, or approval of the manuscript; or decision to submit the manuscript for publication. Authors' contributions All authors conceived the study, carried out the analysis, discussed the results, drafted the first manuscript, critically read and revised the manuscript, and gave final approval for publication. Declaration of competing interest The authors declared no competing interests.
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                Author and article information

                Contributors
                Journal
                Geography and Sustainability
                Published by Elsevier B.V. on behalf of Beijing Normal University.
                2666-6839
                2666-6839
                20 March 2020
                20 March 2020
                Affiliations
                [a ]State Key Laboratory of Resources and Environmental Information System, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
                [b ]Institute of Automation, Chinese Academy of Sciences, Beijing, 100190, China
                [c ]College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
                [d ]School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing, 100049, China
                [e ]Commission on Geographical Information Science, International Geographic Union, Beijing, 100101, China
                Author notes
                [* ]Corresponding author; Tel.: +86 010-64888956 zhouch@ 123456lreis.ac.cn sufz@ 123456lreis.ac.cn sufz@ 123456lreis.ac.cn
                [†]

                These authors contributed equally to this work.

                Article
                S2666-6839(20)30009-2
                10.1016/j.geosus.2020.03.005
                7156159
                ca04c494-29c9-4219-b0d0-86b5014769e4
                © 2020 Published by Elsevier B.V. on behalf of Beijing Normal University.

                Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.

                History
                : 1 March 2020
                : 15 March 2020
                : 16 March 2020
                Categories
                Article

                covid-19,big data,gis,spatial transmission,social management

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