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      The Ecology of Collective Behavior

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      PLoS Biology
      Public Library of Science

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          Abstract

          Networks of local interactions regulate biological systems. Ecological constraints set by resource distribution, operating costs, and the threat of rupture produce similar collective behavior in ants, cells, and gene transcription.

          Abstract

          Similar patterns of interaction, such as network motifs and feedback loops, are used in many natural collective processes, probably because they have evolved independently under similar pressures. Here I consider how three environmental constraints may shape the evolution of collective behavior: the patchiness of resources, the operating costs of maintaining the interaction network that produces collective behavior, and the threat of rupture of the network. The ants are a large and successful taxon that have evolved in very diverse environments. Examples from ants provide a starting point for examining more generally the fit between the particular pattern of interaction that regulates activity, and the environment in which it functions.

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          Most cited references15

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          Structure and function of the feed-forward loop network motif.

          Engineered systems are often built of recurring circuit modules that carry out key functions. Transcription networks that regulate the responses of living cells were recently found to obey similar principles: they contain several biochemical wiring patterns, termed network motifs, which recur throughout the network. One of these motifs is the feed-forward loop (FFL). The FFL, a three-gene pattern, is composed of two input transcription factors, one of which regulates the other, both jointly regulating a target gene. The FFL has eight possible structural types, because each of the three interactions in the FFL can be activating or repressing. Here, we theoretically analyze the functions of these eight structural types. We find that four of the FFL types, termed incoherent FFLs, act as sign-sensitive accelerators: they speed up the response time of the target gene expression following stimulus steps in one direction (e.g., off to on) but not in the other direction (on to off). The other four types, coherent FFLs, act as sign-sensitive delays. We find that some FFL types appear in transcription network databases much more frequently than others. In some cases, the rare FFL types have reduced functionality (responding to only one of their two input stimuli), which may partially explain why they are selected against. Additional features, such as pulse generation and cooperativity, are discussed. This study defines the function of one of the most significant recurring circuit elements in transcription networks.
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            Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability.

            Cell signaling systems that contain positive-feedback loops or double-negative feedback loops can, in principle, convert graded inputs into switch-like, irreversible responses. Systems of this sort are termed "bistable". Recently, several groups have engineered artificial bistable systems into Escherichia coli and Saccharomyces cerevisiae, and have shown that the systems exhibit interesting and potentially useful properties. In addition, two naturally occurring signaling systems, the p42 mitogen-activated protein kinase and c-Jun amino-terminal kinase pathways in Xenopus oocytes, have been shown to exhibit bistable responses. Here we review the basic properties of bistable circuits, the requirements for construction of a satisfactory bistable switch, and the recent progress towards constructing and analysing bistable signaling systems.
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              The emergent properties of a dolphin social network.

              Many complex networks, including human societies, the Internet, the World Wide Web and power grids, have surprising properties that allow vertices (individuals, nodes, Web pages, etc.) to be in close contact and information to be transferred quickly between them. Nothing is known of the emerging properties of animal societies, but it would be expected that similar trends would emerge from the topology of animal social networks. Despite its small size (64 individuals), the Doubtful Sound community of bottlenose dolphins has the same characteristics. The connectivity of individuals follows a complex distribution that has a scale-free power-law distribution for large k. In addition, the ability for two individuals to be in contact is unaffected by the random removal of individuals. The removal of individuals with many links to others does affect the length of the 'information' path between two individuals, but, unlike other scale-free networks, it does not fragment the cohesion of the social network. These self-organizing phenomena allow the network to remain united, even in the case of catastrophic death events.
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                Author and article information

                Journal
                PLoS Biol
                PLoS Biol
                plos
                plosbiol
                PLoS Biology
                Public Library of Science (San Francisco, USA )
                1544-9173
                1545-7885
                March 2014
                11 March 2014
                : 12
                : 3
                : e1001805
                Affiliations
                [1]Department of Biology, Stanford University, Stanford, California, United States of America
                Author notes

                The author has declared that no competing interests exist.

                Essays articulate a specific perspective on a topic of broad interest to scientists.

                Article
                PBIOLOGY-D-13-04468
                10.1371/journal.pbio.1001805
                3949665
                24618695
                d18b567b-d934-4ec3-869b-bff4816ac6f4
                Copyright @ 2014

                Gordon. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                Page count
                Pages: 4
                Funding
                The author received no specific funding for this work.
                Categories
                Essay
                Biology
                Ecology
                Evolutionary Biology
                Systems Biology

                Life sciences
                Life sciences

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