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      Incorporation of an invasive plant into a native insect herbivore food web

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          Abstract

          The integration of invasive species into native food webs represent multifarious dynamics of ecological and evolutionary processes. We document incorporation of Prunus serotina (black cherry) into native insect food webs. We find that P. serotina harbours a herbivore community less dense but more diverse than its native relative, P. padus (bird cherry), with similar proportions of specialists and generalists. While herbivory on P. padus remained stable over the past century, that on P. serotina gradually doubled. We show that P. serotina may have evolved changes in investment in cyanogenic glycosides compared with its native range. In the leaf beetle Gonioctena quinquepunctata, recently shifted from native Sorbus aucuparia to P. serotina, we find divergent host preferences on Sorbus- versus Prunus-derived populations, and weak host-specific differentiation among 380 individuals genotyped for 119 SNP loci. We conclude that evolutionary processes may generate a specialized herbivore community on an invasive plant, allowing prognoses of reduced invasiveness over time. On the basis of the results presented here, we would like to caution that manual control might have the adverse effect of a slowing down of processes of adaptation, and a delay in the decline of the invasive character of P. serotina.

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          R: A Language and environmental for statistical computing

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            Informed and automated k-mer size selection for genome assembly.

            Genome assembly tools based on the de Bruijn graph framework rely on a parameter k, which represents a trade-off between several competing effects that are difficult to quantify. There is currently a lack of tools that would automatically estimate the best k to use and/or quickly generate histograms of k-mer abundances that would allow the user to make an informed decision. We develop a fast and accurate sampling method that constructs approximate abundance histograms with several orders of magnitude performance improvement over traditional methods. We then present a fast heuristic that uses the generated abundance histograms for putative k values to estimate the best possible value of k. We test the effectiveness of our tool using diverse sequencing datasets and find that its choice of k leads to some of the best assemblies. Our tool KmerGenie is freely available at: http://kmergenie.bx.psu.edu/.
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              Adaptive evolution in invasive species.

              Many emerging invasive species display evidence of rapid adaptation. Contemporary genetic studies demonstrate that adaptation to novel environments can occur within 20 generations or less, indicating that evolutionary processes can influence invasiveness. However, the source of genetic or epigenetic variation underlying these changes remains uncharacterised. Here, we review the potential for rapid adaptation from standing genetic variation and from new mutations, and examine four types of evolutionary change that might promote or constrain rapid adaptation during the invasion process. Understanding the source of variation that contributes to adaptive evolution in invasive plants is important for predicting future invasion scenarios, identifying candidate genes involved in invasiveness, and, more generally, for understanding how populations can evolve rapidly in response to novel and changing environments.
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                Author and article information

                Contributors
                Journal
                PeerJ
                PeerJ
                PeerJ
                PeerJ
                PeerJ
                PeerJ Inc. (San Francisco, USA )
                2167-8359
                10 May 2016
                2016
                : 4
                : e1954
                Affiliations
                [1 ]Endless Forms group, Naturalis Biodiversity Center , Leiden, the Netherlands
                [2 ]Institute for Biology Leiden, Leiden University , Leiden, the Netherlands
                [3 ]Groningen Institute for Evolutionary Life Sciences, University of Groningen , Groningen, the Netherlands
                [4 ]Departamento de Química, Instituto de Ciências Exatas, Universidade Federal de Minas Gerais , Belo Horizonte, Minas Gerais, Brazil
                [5 ]ServiceXS , Leiden, the Netherlands
                [6 ]University of Applied Sciences Leiden , Leiden, the Netherlands
                [7 ]Biodiversity Discovery group, Naturalis Biodiversity Center , Leiden, the Netherlands
                [8 ]IBED, University of Amsterdam , Amsterdam, the Netherlands
                [9 ]Natural Products Laboratory, Leiden University , Leiden, the Netherlands
                Article
                1954
                10.7717/peerj.1954
                4867706
                27190702
                d20ce7f3-224d-4a0b-aa96-3652b6d22286
                ©2016 Schilthuizen et al.

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.

                History
                : 8 January 2016
                : 30 March 2016
                Funding
                Funded by: Uyttenboogaart-Eliasen Foundation
                This study was financially supported by grants from the Uyttenboogaart-Eliasen Foundation and the Team for Invasive Exotics of the former Netherlands Ministry for Agriculture, Nature, and Food Quality. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Ecology
                Entomology
                Environmental Sciences
                Evolutionary Studies
                Plant Science

                adaptation,exotic plants,insect herbivores,prunus serotina,secondary metabolites

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