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      Translational induction of ATF4 during integrated stress response requires noncanonical initiation factors eIF2D and DENR

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          Abstract

          The Integrated Stress Response (ISR) helps metazoan cells adapt to cellular stress by limiting the availability of initiator methionyl-tRNA for translation. Such limiting conditions paradoxically stimulate the translation of ATF4 mRNA through a regulatory 5′ leader sequence with multiple upstream Open Reading Frames (uORFs), thereby activating stress-responsive gene expression. Here, we report the identification of two critical regulators of such ATF4 induction, the noncanonical initiation factors eIF2D and DENR. Loss of eIF2D and DENR in Drosophila results in increased vulnerability to amino acid deprivation, susceptibility to retinal degeneration caused by endoplasmic reticulum (ER) stress, and developmental defects similar to ATF4 mutants. eIF2D requires its RNA-binding motif for regulation of 5′ leader-mediated ATF4 translation. Consistently, eIF2D and DENR deficient human cells show impaired ATF4 protein induction in response to ER stress. Altogether, our findings indicate that eIF2D and DENR are critical mediators of ATF4 translational induction and stress responses in vivo.

          Abstract

          Translation of ATF4 mRNA is stimulated during the integrated stress response. Here the authors show that two noncanonical translation initiation factors eIF2D and DENR are required for translational induction of ATF4 mRNA in Drosophila and human cells.

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          Most cited references43

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          Translational control by 5'-untranslated regions of eukaryotic mRNAs.

          The eukaryotic 5' untranslated region (UTR) is critical for ribosome recruitment to the messenger RNA (mRNA) and start codon choice and plays a major role in the control of translation efficiency and shaping the cellular proteome. The ribosomal initiation complex is assembled on the mRNA via a cap-dependent or cap-independent mechanism. We describe various mechanisms controlling ribosome scanning and initiation codon selection by 5' upstream open reading frames, translation initiation factors, and primary and secondary structures of the 5'UTR, including particular sequence motifs. We also discuss translational control via phosphorylation of eukaryotic initiation factor 2, which is implicated in learning and memory, neurodegenerative diseases, and cancer.
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            Diabetes mellitus and exocrine pancreatic dysfunction in perk-/- mice reveals a role for translational control in secretory cell survival.

            The protein kinase PERK couples protein folding in the endoplasmic reticulum (ER) to polypeptide biosynthesis by phosphorylating the alpha subunit of eukaryotic translation initiation factor 2 (eIF2alpha), attenuating translation initiation in response to ER stress. PERK is highly expressed in mouse pancreas, an organ active in protein secretion. Under physiological conditions, PERK was partially activated, accounting for much of the phosphorylated eIF2alpha in the pancreas. The exocrine and endocrine pancreas developed normally in Perk-/- mice. Postnatally, ER distention and activation of the ER stress transducer IRE1alpha accompanied increased cell death and led to progressive diabetes mellitus and exocrine pancreatic insufficiency. These findings suggest a special role for translational control in protecting secretory cells from ER stress.
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              Suppression of eIF2α kinases alleviates AD-related synaptic plasticity and spatial memory deficits

              Expression of long-lasting synaptic plasticity and long-term memory requires new protein synthesis, which can be repressed by phosphorylation of eukaryotic initiation factor 2α subunit (eIF2α). It was reported previously that eIF2α phosphorylation is elevated in the brains of Alzheimer’s disease (AD) patients and AD model mice. Therefore, we determined whether suppressing eIF2α kinases could alleviate synaptic plasticity and memory deficits in AD model mice. The genetic deletion of the eIF2α kinase PERK prevented enhanced eIF2α phosphorylation, as well as deficits in protein synthesis, synaptic plasticity, and spatial memory in APP/PS1 AD model mice. Similarly, deletion of another eIF2α kinase, GCN2, prevented impairments of synaptic plasticity and spatial memory defects displayed in the APP/PS1 mice. Our findings implicate aberrant eIF2α phosphorylation as a novel molecular mechanism underlying AD-related synaptic pathophysioloy and memory dysfunction and suggest that PERK and GCN2 are potential therapeutic targets for the treatment of individuals with AD.
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                Author and article information

                Contributors
                hyungdon.ryoo@nyumc.org
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                16 September 2020
                16 September 2020
                2020
                : 11
                : 4677
                Affiliations
                [1 ]GRID grid.137628.9, ISNI 0000 0004 1936 8753, Department of Cell Biology, , New York University Grossman School of Medicine, ; New York, NY 10016 USA
                [2 ]GRID grid.14003.36, ISNI 0000 0001 2167 3675, Department of Pharmaceutical Sciences, , University of Wisconsin-Madison, ; Madison, WI 53705 USA
                [3 ]GRID grid.137628.9, ISNI 0000 0004 1936 8753, Department of Biochemistry and Molecular Pharmacology, , New York University Grossman School of Medicine, ; New York, NY 10016 USA
                Author information
                http://orcid.org/0000-0003-1930-3549
                http://orcid.org/0000-0001-5731-6426
                http://orcid.org/0000-0001-6727-1364
                http://orcid.org/0000-0002-0643-4497
                http://orcid.org/0000-0002-1046-535X
                Article
                18453
                10.1038/s41467-020-18453-1
                7495428
                32938929
                d3ac25b6-0fe5-4713-97f8-cd394ea32bc2
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 28 October 2019
                : 17 August 2020
                Funding
                Funded by: FundRef https://doi.org/10.13039/100000968, American Heart Association (American Heart Association, Inc.);
                Award ID: 17POST33420032
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100000053, U.S. Department of Health & Human Services | NIH | National Eye Institute (NEI);
                Award ID: K99EY029013
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100000002, U.S. Department of Health & Human Services | National Institutes of Health (NIH);
                Award ID: R01GM123204
                Award ID: DP2OD004631
                Award ID: R01GM125954
                Award Recipient :
                Funded by: U.S. Department of Health & Human Services | National Institutes of Health (NIH)
                Funded by: FundRef https://doi.org/10.13039/100006984, Irma T. Hirschl Trust (Irma T. Hirschl Charitable Trust);
                Funded by: FundRef https://doi.org/10.13039/100006955, U.S. Department of Health & Human Services | NIH | Office of Extramural Research, National Institutes of Health (OER);
                Award ID: R01EY020866
                Award Recipient :
                Funded by: U.S. Department of Health & Human Services | National Institutes of Health (NIH)
                Categories
                Article
                Custom metadata
                © The Author(s) 2020

                Uncategorized
                stress signalling,gene regulation,translation
                Uncategorized
                stress signalling, gene regulation, translation

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