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      Ion-Pair Formation in Neutral Potassium-Neutral Pyrimidine Collisions: Electron Transfer Experiments

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          Abstract

          We report novel data on ion-pair formation in hyperthermal (30–800 eV) neutral potassium collisions with neutral pyrimidine (Pyr, C 4H 4N 2) molecules. In this collision regime, negative ions formed by electron transfer from the alkali atom to the target molecule were time-of-flight mass analyzed and the fragmentation patterns and branching ratios have been obtained. The most abundant product anions have been assigned to CN and C 2H and the electron transfer mechanisms are comprehensively discussed. Particular importance is also given to the efficient loss of integrity of the pyrimidine ring in the presence of an extra electron, which is in contrast to dissociative electron attachment experiments yielding the dehydrogenated parent anion. Theoretical calculations were performed for pyrimidine in the presence of a potassium atom and provided a strong basis for the assignment of the lowest unoccupied molecular orbitals accessed in the collision process. In order to further our knowledge about the collision dynamics, potassium cation (K +) energy loss spectrum has been obtained and within this context, we also discuss the role of the accessible electronic states. A vertical electron affinity of (−5.69 ± 0.20) eV was obtained and may be assigned to a π 3 * ( b 1) state that leads to CN formation.

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          Resonant formation of DNA strand breaks by low-energy (3 to 20 eV) electrons.

          Most of the energy deposited in cells by ionizing radiation is channeled into the production of abundant free secondary electrons with ballistic energies between 1 and 20 electron volts. Here it is shown that reactions of such electrons, even at energies well below ionization thresholds, induce substantial yields of single- and double-strand breaks in DNA, which are caused by rapid decays of transient molecular resonances localized on the DNA's basic components. This finding presents a fundamental challenge to the traditional notion that genotoxic damage by secondary electrons can only occur at energies above the onset of ionization, or upon solvation when they become a slowly reacting chemical species.
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            Electron Attachment Energies of the DNA Bases

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              Temporary negative ions and electron affinities of benzene andN‐heterocyclic molecules: pyridine, pyridazine, pyrimidine, pyrazine, ands‐triazine

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                Author and article information

                Contributors
                Journal
                Front Chem
                Front Chem
                Front. Chem.
                Frontiers in Chemistry
                Frontiers Media S.A.
                2296-2646
                18 April 2019
                2019
                : 7
                : 264
                Affiliations
                [1] 1Atomic and Molecular Collisions Laboratory, Centre of Physics and Technological Research (CEFITEC), Department of Physics, Universidade NOVA de Lisboa , Costa de Caparica, Portugal
                [2] 2Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas (CSIC) , Madrid, Spain
                [3] 3Departament de Ciència de Materials i Química Física, Universitat de Barcelona , Barcelona, Spain
                [4] 4CNRS, Institut Lumière Matière, University of Lyon, Université Claude Bernard Lyon 1 , Villeurbanne, France
                Author notes

                Edited by: Doo Soo Chung, Seoul National University, South Korea

                Reviewed by: Stanislav A. Pshenichnyuk, Ufa Research Centre (RAS), Russia; Alexei S. Komolov, Saint Petersburg State University, Russia

                *Correspondence: Marie-Christine Bacchus-Montabonel bacchus@ 123456univ-lyon1.fr

                This article was submitted to Physical Chemistry and Chemical Physics, a section of the journal Frontiers in Chemistry

                Article
                10.3389/fchem.2019.00264
                6482480
                31058139
                d82f323f-7d90-4521-9ba1-6b84b6e04d23
                Copyright © 2019 Mendes, Pamplona, Kumar, da Silva, Aguilar, García, Bacchus-Montabonel and Limao-Vieira.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 24 January 2019
                : 01 April 2019
                Page count
                Figures: 5, Tables: 1, Equations: 2, References: 56, Pages: 10, Words: 6677
                Funding
                Funded by: Fundação para a Ciência e a Tecnologia 10.13039/501100001871
                Award ID: IF/00380/2014
                Award ID: PD/BD/106038/2015
                Award ID: PD/BD/142831/2018
                Award ID: PTDC/FIS-AQM/31215/2017
                Award ID: PTDC/FIS-AQM/31281/2017
                Award ID: RaBBiT, PD/00193/2010
                Award ID: UID/FIS/00068/2019
                Award ID: UID/Multi/04378/2013 (UCIBIO)
                Funded by: Ministerio de Economía, Industria y Competitividad, Gobierno de España 10.13039/501100010198
                Award ID: CTQ2013-41307-P
                Award ID: FIS2016-80440
                Funded by: Grand Équipement National De Calcul Intensif 10.13039/501100010190
                Award ID: A0030807662
                Award ID: CCRT/CINES/IDRIS
                Categories
                Chemistry
                Original Research

                pyrimidine,negative ions,energy loss,time-of-flight,calculations

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