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      Recent advances in covalent, site-specific protein immobilization

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          Abstract

          The properties of biosensors, biomedical implants, and other materials based on immobilized proteins greatly depend on the method employed to couple the protein molecules to their solid support. Covalent, site-specific immobilization strategies are robust and can provide the level of control that is desired in this kind of application. Recent advances include the use of enzymes, such as sortase A, to couple proteins in a site-specific manner to materials such as microbeads, glass, and hydrogels. Also, self-labeling tags such as the SNAP-tag can be employed. Last but not least, chemical approaches based on bioorthogonal reactions, like the azide–alkyne cycloaddition, have proven to be powerful tools. The lack of comparative studies and quantitative analysis of these immobilization methods hampers the selection process of the optimal strategy for a given application. However, besides immobilization efficiency, the freedom in selecting the site of conjugation and the size of the conjugation tag and the researcher’s expertise regarding molecular biology and/or chemical techniques will be determining factors in this regard.

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          Most cited references78

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          Cu-catalyzed azide-alkyne cycloaddition.

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            A general method for the covalent labeling of fusion proteins with small molecules in vivo.

            Characterizing the movement, interactions, and chemical microenvironment of a protein inside the living cell is crucial to a detailed understanding of its function. Most strategies aimed at realizing this objective are based on genetically fusing the protein of interest to a reporter protein that monitors changes in the environment of the coupled protein. Examples include fusions with fluorescent proteins, the yeast two-hybrid system, and split ubiquitin. However, these techniques have various limitations, and considerable effort is being devoted to specific labeling of proteins in vivo with small synthetic molecules capable of probing and modulating their function. These approaches are currently based on the noncovalent binding of a small molecule to a protein, the formation of stable complexes between biarsenical compounds and peptides containing cysteines, or the use of biotin acceptor domains. Here we describe a general method for the covalent labeling of fusion proteins in vivo that complements existing methods for noncovalent labeling of proteins and that may open up new ways of studying proteins in living cells.
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              Adding new chemistries to the genetic code.

              The development of new orthogonal aminoacyl-tRNA synthetase/tRNA pairs has led to the addition of approximately 70 unnatural amino acids (UAAs) to the genetic codes of Escherichia coli, yeast, and mammalian cells. These UAAs represent a wide range of structures and functions not found in the canonical 20 amino acids and thus provide new opportunities to generate proteins with enhanced or novel properties and probes of protein structure and function.
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                Author and article information

                Journal
                F1000Res
                F1000Res
                F1000Research
                F1000Research
                F1000Research (London, UK )
                2046-1402
                12 September 2016
                2016
                : 5
                : F1000 Faculty Rev-2303
                Affiliations
                [1 ]Center for Evolutionary Chemical Biology, Department of Chemistry & Nano-Science Center, University of Copenhagen, Copenhagen, Denmark
                Author notes

                Competing interests: The authors declare that they have no competing interests.

                Article
                10.12688/f1000research.9002.1
                5022707
                e25ffdae-e29e-4fbb-85a4-82f7befe6d2a
                Copyright: © 2016 Meldal M and Schoffelen S

                This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 7 September 2016
                Funding
                The authors acknowledge the Danish Council for Independent Research and the European Commission (DFF Mobilex grant 4093-00083) for financial support.
                Categories
                Review
                Articles
                Applied Microbiology
                Biocatalysis
                Protein Chemistry & Proteomics

                enzyme-mediated immobilization,self-labeling protein tag,bioorthagonal reactions,oxime ligation,azide-alkyne cycloaddition

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