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      Best practices for analyzing large-scale health data from wearables and smartphone apps

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          Abstract

          Smartphone apps and wearable devices for tracking physical activity and other health behaviors have become popular in recent years and provide a largely untapped source of data about health behaviors in the free-living environment. The data are large in scale, collected at low cost in the “wild”, and often recorded in an automatic fashion, providing a powerful complement to traditional surveillance studies and controlled trials. These data are helping to reveal, for example, new insights about environmental and social influences on physical activity. The observational nature of the datasets and collection via commercial devices and apps pose challenges, however, including the potential for measurement, population, and/or selection bias, as well as missing data. In this article, we review insights gleaned from these datasets and propose best practices for addressing the limitations of large-scale data from apps and wearables. Our goal is to enable researchers to effectively harness the data from smartphone apps and wearable devices to better understand what drives physical activity and other health behaviors.

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          Most cited references36

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          Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

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            On the measurement of inequality

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              Finding and evaluating community structure in networks.

              We propose and study a set of algorithms for discovering community structure in networks-natural divisions of network nodes into densely connected subgroups. Our algorithms all share two definitive features: first, they involve iterative removal of edges from the network to split it into communities, the edges removed being identified using any one of a number of possible "betweenness" measures, and second, these measures are, crucially, recalculated after each removal. We also propose a measure for the strength of the community structure found by our algorithms, which gives us an objective metric for choosing the number of communities into which a network should be divided. We demonstrate that our algorithms are highly effective at discovering community structure in both computer-generated and real-world network data, and show how they can be used to shed light on the sometimes dauntingly complex structure of networked systems.
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                Author and article information

                Contributors
                jenhicks@stanford.edu
                Journal
                NPJ Digit Med
                NPJ Digit Med
                NPJ Digital Medicine
                Nature Publishing Group UK (London )
                2398-6352
                3 June 2019
                3 June 2019
                2019
                : 2
                : 45
                Affiliations
                [1 ]ISNI 0000000419368956, GRID grid.168010.e, Department of Bioengineering, , Stanford University, ; Stanford, CA USA
                [2 ]ISNI 0000000122986657, GRID grid.34477.33, Paul G. Allen School of Computer Science & Engineering, , University of Washington, ; Seattle, WA USA
                [3 ]ISNI 0000000419368956, GRID grid.168010.e, Computer Science Department, , Stanford University, ; Stanford, CA USA
                [4 ]Azumio, Inc., Redwood City, CA USA
                [5 ]ISNI 0000000419368956, GRID grid.168010.e, Department of Health Research and Policy, , Stanford University School of Medicine, ; Stanford, CA USA
                [6 ]ISNI 0000000419368956, GRID grid.168010.e, Stanford Prevention Research Center, Department of Medicine, , Stanford University School of Medicine, ; Stanford, CA USA
                [7 ]Chan Zuckerberg Biohub, San Francisco, CA USA
                [8 ]ISNI 0000000419368956, GRID grid.168010.e, Department of Mechanical Engineering, , Stanford University, ; Stanford, CA USA
                Author information
                http://orcid.org/0000-0002-1334-8861
                Article
                121
                10.1038/s41746-019-0121-1
                6550237
                31304391
                e26f733e-7c3b-4f8f-8883-8944a6e4c51e
                © The Author(s) 2019

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 8 February 2019
                : 7 May 2019
                Funding
                Funded by: FundRef https://doi.org/10.13039/100000002, U.S. Department of Health & Human Services | National Institutes of Health (NIH);
                Award ID: P2C HD065690
                Award ID: U54 EB020405
                Award ID: U54 EB020405
                Award ID: U54 EB020405
                Award ID: R01DK102016
                Award ID: U54 EB020405
                Award ID: P2C HD065690
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100005492, Stanford University (SU);
                Award ID: Catalyst for Collaborative Solutions
                Award ID: Discovery Innovation Fund in Basic Biomedical Sciences
                Award ID: Catalyst for Collaborative Solutions
                Award Recipient :
                Funded by: SAP Stanford Graduate Fellowship
                Funded by: Stanford Data Science Initiative
                Funded by: FundRef https://doi.org/10.13039/100000867, Robert Wood Johnson Foundation (RWJF);
                Award ID: 7334
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100000054, U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI);
                Award ID: 5R01CA211048 and P20CA217199
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100000923, Silicon Valley Community Foundation (SVCF);
                Award ID: 101518
                Award Recipient :
                Funded by: Nutrilite Health Institute Wellness Fund provided by Amway to the Stanford Prevention Research Center, US Public Health Service Grant 1U54MD010724 (PI: M. Cullen)
                Funded by: Stanford Data Science Hub, Chan Zuckerberg Biohub
                Categories
                Perspective
                Custom metadata
                © The Author(s) 2019

                data mining,statistical methods,health sciences
                data mining, statistical methods, health sciences

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