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      The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

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          Abstract

          The iPlant Collaborative provides life science research communities access to comprehensive, scalable, and cohesive computational infrastructure for data management; identity management; collaboration tools; and cloud, high-performance, high-throughput computing. iPlant provides training, learning material, and best practice resources to help all researchers make the best use of their data, expand their computational skill set, and effectively manage their data and computation when working as distributed teams. iPlant’s platform permits researchers to easily deposit and share their data and deploy new computational tools and analysis workflows, allowing the broader community to easily use and reuse those data and computational analyses.

          Abstract

          This Community Page highlights the iPlant Collaborative, which provides scalable and extensible data management and computational resources for life science research, including learning materials and support to readily integrate these resources with existing workflows.

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          Most cited references1

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          Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

          Increased reliance on computational approaches in the life sciences has revealed grave concerns about how accessible and reproducible computation-reliant results truly are. Galaxy http://usegalaxy.org, an open web-based platform for genomic research, addresses these problems. Galaxy automatically tracks and manages data provenance and provides support for capturing the context and intent of computational methods. Galaxy Pages are interactive, web-based documents that provide users with a medium to communicate a complete computational analysis.
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            Author and article information

            Journal
            PLoS Biol
            PLoS Biol
            plos
            plosbiol
            PLoS Biology
            Public Library of Science (San Francisco, CA USA )
            1544-9173
            1545-7885
            11 January 2016
            January 2016
            : 14
            : 1
            : e1002342
            Affiliations
            [1 ]The University of Arizona, Tucson, Arizona, United States of America
            [2 ]Texas Advanced Computing Center, The University of Texas at Austin, Austin, Texas, United States of America
            [3 ]Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America
            Author notes

            The authors have declared that no competing interests exist.

            Article
            PBIOLOGY-D-15-00740
            10.1371/journal.pbio.1002342
            4709069
            26752627
            e5313fff-1499-457f-a716-2b4058973ff2
            © 2016 Merchant et al

            This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

            History
            Page count
            Figures: 3, Tables: 1, Pages: 9
            Funding
            The iPlant Collaborative is funded by the National Science Foundation under Award Numbers DBI - 0735191 and DBI - 1265383. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
            Categories
            Community Page

            Life sciences
            Life sciences

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