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      Is Open Access

      Safety, infectivity and immunogenicity of a genetically attenuated blood-stage malaria vaccine

      research-article
      1 , 1 , 2 , 1 , 3 , 1 , 3 , 4 , 1 , 1 , 1 , 5 , 6 , 6 , 7 , 6 , 8 , 9 , 6 , 10 , 11 , 10 , 11 , 10 , 11 , 7 , 10 , 12 , 13 , 3 , 3 , 14 , 6 , 15 , 6 , 8 , 6 , 16 , 1 , 5 , 17 , 1 , 1 , 1 , 1 , 1 , 1 , 12 ,
      BMC Medicine
      BioMed Central
      Malaria, Vaccine, Plasmodium falciparum, Genetically attenuated, KAHRP, PfEMP1

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          Abstract

          Background

          There is a clear need for novel approaches to malaria vaccine development. We aimed to develop a genetically attenuated blood-stage vaccine and test its safety, infectivity, and immunogenicity in healthy volunteers. Our approach was to target the gene encoding the knob-associated histidine-rich protein (KAHRP), which is responsible for the assembly of knob structures at the infected erythrocyte surface. Knobs are required for correct display of the polymorphic adhesion ligand P. falciparum erythrocyte membrane protein 1 (PfEMP1), a key virulence determinant encoded by a repertoire of var genes.

          Methods

          The gene encoding KAHRP was deleted from P. falciparum 3D7 and a master cell bank was produced in accordance with Good Manufacturing Practice. Eight malaria naïve males were intravenously inoculated (day 0) with 1800 (2 subjects), 1.8 × 10 5 (2 subjects), or 3 × 10 6 viable parasites (4 subjects). Parasitemia was measured using qPCR; immunogenicity was determined using standard assays. Parasites were rescued into culture for in vitro analyses (genome sequencing, cytoadhesion assays, scanning electron microscopy, var gene expression).

          Results

          None of the subjects who were administered with 1800 or 1.8 × 10 5 parasites developed parasitemia; 3/4 subjects administered 3× 10 6 parasites developed significant parasitemia, first detected on days 13, 18, and 22. One of these three subjects developed symptoms of malaria simultaneously with influenza B (day 17; 14,022 parasites/mL); one subject developed mild symptoms on day 28 (19,956 parasites/mL); and one subject remained asymptomatic up to day 35 (5046 parasites/mL). Parasitemia rapidly cleared with artemether/lumefantrine. Parasitemia induced a parasite-specific antibody and cell-mediated immune response. Parasites cultured ex vivo exhibited genotypic and phenotypic properties similar to inoculated parasites, although the var gene expression profile changed during growth in vivo.

          Conclusions

          This study represents the first clinical investigation of a genetically attenuated blood-stage human malaria vaccine. A P. falciparum 3D7 kahrp– strain was tested in vivo and found to be immunogenic but can lead to patent parasitemia at high doses.

          Trial registration

          Australian New Zealand Clinical Trials Registry (number: ACTRN12617000824369; date: 06 June 2017).

          Supplementary Information

          The online version contains supplementary material available at 10.1186/s12916-021-02150-x.

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          Most cited references53

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          Fast gapped-read alignment with Bowtie 2.

          As the rate of sequencing increases, greater throughput is demanded from read aligners. The full-text minute index is often used to make alignment very fast and memory-efficient, but the approach is ill-suited to finding longer, gapped alignments. Bowtie 2 combines the strengths of the full-text minute index with the flexibility and speed of hardware-accelerated dynamic programming algorithms to achieve a combination of high speed, sensitivity and accuracy.
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            VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing.

            Cancer is a disease driven by genetic variation and mutation. Exome sequencing can be utilized for discovering these variants and mutations across hundreds of tumors. Here we present an analysis tool, VarScan 2, for the detection of somatic mutations and copy number alterations (CNAs) in exome data from tumor-normal pairs. Unlike most current approaches, our algorithm reads data from both samples simultaneously; a heuristic and statistical algorithm detects sequence variants and classifies them by somatic status (germline, somatic, or LOH); while a comparison of normalized read depth delineates relative copy number changes. We apply these methods to the analysis of exome sequence data from 151 high-grade ovarian tumors characterized as part of the Cancer Genome Atlas (TCGA). We validated some 7790 somatic coding mutations, achieving 93% sensitivity and 85% precision for single nucleotide variant (SNV) detection. Exome-based CNA analysis identified 29 large-scale alterations and 619 focal events per tumor on average. As in our previous analysis of these data, we observed frequent amplification of oncogenes (e.g., CCNE1, MYC) and deletion of tumor suppressors (NF1, PTEN, and CDKN2A). We searched for additional recurrent focal CNAs using the correlation matrix diagonal segmentation (CMDS) algorithm, which identified 424 significant events affecting 582 genes. Taken together, our results demonstrate the robust performance of VarScan 2 for somatic mutation and CNA detection and shed new light on the landscape of genetic alterations in ovarian cancer.
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              Efficacy and safety of RTS,S/AS01 malaria vaccine with or without a booster dose in infants and children in Africa: final results of a phase 3, individually randomised, controlled trial.

              (2015)
              The efficacy and safety of the RTS,S/AS01 candidate malaria vaccine during 18 months of follow-up have been published previously. Herein, we report the final results from the same trial, including the efficacy of a booster dose.
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                Author and article information

                Contributors
                james.mccarthy@unimelb.edu.au
                Journal
                BMC Med
                BMC Med
                BMC Medicine
                BioMed Central (London )
                1741-7015
                22 November 2021
                22 November 2021
                2021
                : 19
                : 293
                Affiliations
                [1 ]GRID grid.1049.c, ISNI 0000 0001 2294 1395, QIMR Berghofer Medical Research Institute, ; Brisbane, Australia
                [2 ]Current address: PharmOut, 111 Eagle Street, Brisbane, Queensland 4000 Australia
                [3 ]GRID grid.48004.38, ISNI 0000 0004 1936 9764, Liverpool School of Tropical Medicine, ; Liverpool, UK
                [4 ]GRID grid.415490.d, ISNI 0000 0001 2177 007X, Centre of Defence Pathology, , Royal Centre for Defence Medicine, Joint Hospital Group, ; Birmingham, UK
                [5 ]GRID grid.1003.2, ISNI 0000 0000 9320 7537, The University of Queensland, ; Brisbane, Australia
                [6 ]GRID grid.1042.7, The Walter and Eliza Hall Institute of Medical Research, ; Melbourne, Australia
                [7 ]GRID grid.1008.9, ISNI 0000 0001 2179 088X, Department of Microbiology and Immunology, , University of Melbourne, ; Melbourne, Australia
                [8 ]GRID grid.1008.9, ISNI 0000 0001 2179 088X, Department of Medical Biology, , University of Melbourne, ; Melbourne, Australia
                [9 ]Current address: Medicines Development for Global Health Limited, 18 Kavanagh Street, Southbank, Victoria 3006 Australia
                [10 ]GRID grid.1008.9, ISNI 0000 0001 2179 088X, Bio21 Molecular Science and Biotechnology Institute, ; Melbourne, Australia
                [11 ]GRID grid.1008.9, ISNI 0000 0001 2179 088X, Department of Biochemistry and Molecular Biology, , University of Melbourne, ; Melbourne, Australia
                [12 ]GRID grid.483778.7, The Peter Doherty Institute for Infection and Immunity, ; Melbourne, Australia
                [13 ]GRID grid.416153.4, ISNI 0000 0004 0624 1200, Department of Medicine, , Royal Melbourne Hospital, ; Melbourne, Australia
                [14 ]GRID grid.1056.2, ISNI 0000 0001 2224 8486, Burnet Institute, ; Melbourne, Australia
                [15 ]GRID grid.454018.c, ISNI 0000 0004 0632 8971, Current address: GSK, ; 436 Johnston Street, Abbotsford, Victoria 3067 Australia
                [16 ]GRID grid.1011.1, ISNI 0000 0004 0474 1797, Australian Institute of Tropical Health and Medicine, , James Cook University, ; Cairns, Australia
                [17 ]GRID grid.416562.2, ISNI 0000 0004 0642 1666, Department of Medicine and Infectious Diseases, , Mater Hospital and Mater Research, ; Brisbane, Australia
                Article
                2150
                10.1186/s12916-021-02150-x
                8606250
                34802442
                e9b53336-72a3-47bb-b87c-49aa130c84ca
                © The Author(s) 2021

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 6 July 2021
                : 30 September 2021
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100000925, national health and medical research council;
                Award ID: 1132975
                Categories
                Research Article
                Custom metadata
                © The Author(s) 2021

                Medicine
                malaria,vaccine,plasmodium falciparum,genetically attenuated,kahrp,pfemp1
                Medicine
                malaria, vaccine, plasmodium falciparum, genetically attenuated, kahrp, pfemp1

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