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      Impact of Glucosamine Supplementation on Gut Health

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          Abstract

          Glucosamine (GLU) is a natural compound found in cartilage, and supplementation with glucosamine has been shown to improve joint heath and has been linked to reduced mortality rates. GLU is poorly absorbed and may exhibit functional properties in the gut. The purpose of this study was to examine the impact of glucosamine on gastrointestinal function as well as changes in fecal microbiota and metabolome. Healthy males ( n = 6) and females ( n = 5) (33.4 ± 7.7 years, 174.1 ± 12.0 cm, 76.5 ± 12.9 kg, 25.2 ± 3.1 kg/m 2, n = 11) completed two supplementation protocols that each spanned three weeks separated by a washout period that lasted two weeks. In a randomized, double-blind, placebo-controlled, crossover fashion, participants ingested a daily dose of GLU hydrochloride (3000 mg GlucosaGreen ®, TSI Group Ltd., Missoula, MT, USA) or maltodextrin placebo. Study participants completed bowel habit and gastrointestinal symptoms questionnaires in addition to providing a stool sample that was analyzed for fecal microbiota and metabolome at baseline and after the completion of each supplementation period. GLU significantly reduced stomach bloating and showed a trend towards reducing constipation and hard stools. Phylogenetic diversity (Faith’s PD) and proportions of Pseudomonadaceae, Peptococcaceae, and Bacillaceae were significantly reduced following GLU consumption. GLU supplementation significantly reduced individual, total branched-chain, and total amino acid excretion, with no glucosamine being detected in any of the fecal samples. GLU had no effect on fecal short-chain fatty acids levels. GLU supplementation provided functional gut health benefits and induced fecal microbiota and metabolome changes.

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          MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

          We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.
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            Cutadapt removes adapter sequences from high-throughput sequencing reads

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              BEDTools: a flexible suite of utilities for comparing genomic features

              Motivation: Testing for correlations between different sets of genomic features is a fundamental task in genomics research. However, searching for overlaps between features with existing web-based methods is complicated by the massive datasets that are routinely produced with current sequencing technologies. Fast and flexible tools are therefore required to ask complex questions of these data in an efficient manner. Results: This article introduces a new software suite for the comparison, manipulation and annotation of genomic features in Browser Extensible Data (BED) and General Feature Format (GFF) format. BEDTools also supports the comparison of sequence alignments in BAM format to both BED and GFF features. The tools are extremely efficient and allow the user to compare large datasets (e.g. next-generation sequencing data) with both public and custom genome annotation tracks. BEDTools can be combined with one another as well as with standard UNIX commands, thus facilitating routine genomics tasks as well as pipelines that can quickly answer intricate questions of large genomic datasets. Availability and implementation: BEDTools was written in C++. Source code and a comprehensive user manual are freely available at http://code.google.com/p/bedtools Contact: aaronquinlan@gmail.com; imh4y@virginia.edu Supplementary information: Supplementary data are available at Bioinformatics online.
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                Author and article information

                Contributors
                Role: Academic Editor
                Journal
                Nutrients
                Nutrients
                nutrients
                Nutrients
                MDPI
                2072-6643
                24 June 2021
                July 2021
                : 13
                : 7
                : 2180
                Affiliations
                [1 ]Exercise and Performance Nutrition Laboratory, School of Health Sciences, Lindenwood University, St. Charles, MO 63301, USA; jmm805@ 123456lindenwood.edu (J.M.M.); rstecker@ 123456lindenwood.edu (R.A.S.); kratliff@ 123456lindenwood.edu (K.M.R.)
                [2 ]Department of Food Science & Technology, University of California, Davis, CA 95616, USA; pfinnegan@ 123456ucdavis.edu (P.F.); hnlee@ 123456ucdavis.edu (H.L.); cslupsky@ 123456ucdavis.edu (C.M.S.); mmarco@ 123456ucdavis.edu (M.L.M.)
                [3 ]Increnovo, LLC, Milwaukee, WI 53202, USA; ralf.jaeger@ 123456increnovo.com
                [4 ]Department of Nutrition, University of California, Davis, CA 95616, USA; martin.purpura@ 123456increnovo.com
                [5 ]Jamieson Wellness Inc., Windsor, ON N8N 5E7, Canada; cwissent@ 123456jamiesonlabs.com
                [6 ]Dr. Theo’s, Inc., Tucson, AZ 85750, USA; drjtheo@ 123456aol.com
                Author notes
                [* ]Correspondence: ckerksick@ 123456lindenwood.edu ; Tel.: +636-627-4629
                Author information
                https://orcid.org/0000-0003-4702-3077
                https://orcid.org/0000-0002-5100-1594
                https://orcid.org/0000-0003-0458-7294
                Article
                nutrients-13-02180
                10.3390/nu13072180
                8308242
                34202877
                eadad2f3-e7e4-478b-9aa9-1d5bfb3759be
                © 2021 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( https://creativecommons.org/licenses/by/4.0/).

                History
                : 20 May 2021
                : 22 June 2021
                Categories
                Article

                Nutrition & Dietetics
                microbiota,gut health,diversity,metabolomics,stool,gastrointestinal
                Nutrition & Dietetics
                microbiota, gut health, diversity, metabolomics, stool, gastrointestinal

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