For Publishers
DiscoveryMetadataPeer reviewHostingPublishing
For Researchers
JoinPublishReviewCollect
Register
Blog
About
Search
Advanced search
My ScienceOpen
Search
For Publishers
For Researchers
Blog
About
20
views
1
references
 Top references
cited by
0
    
0 reviews
 Review
0
comments
 Comment
0
recommends
+1 Recommend
0 collections
    0
    shares
      330
      similar
       All similar
      • Record: found
      • Abstract: found
      • Article: not found

      Corrigendum to “VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity”

      correction

      Read this article at

      ScienceOpenPublisherPMC
      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          In the article titled “VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity” [1], in Section 2.3. (Output and Result) this URL http://bio.njfu.edu.cn:8080/vgsc-web/static/downloads/vgsc-manual.pdf should be replaced by this URL http://bio.njfu.edu.cn/vgsc-web/static/downloads/vgsc-manual.pdf and in Section 2.4. (Online System), this URL http://bio.njfu.edu.cn:8080/vgsc-web should be replaced by this URL http://bio.njfu.edu.cn/vgsc-web.

          Related collections

          Most cited references1

          • Record: found
          • Abstract: found
          • Article: not found

          VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity

          Yiqing Xu, Changwei Bi, Guoxin Wu … (2016)
          Background. In order to understand the colocalization of genetic loci amongst species, synteny and collinearity analysis is a frequent task in comparative genomics research. However many analysis software packages are not effective in visualizing results. Problems include lack of graphic visualization, simple representation, or inextensible format of outputs. Moreover, higher throughput sequencing technology requires higher resolution image output. Implementation. To fill this gap, this paper publishes VGSC, the Vector Graph toolkit of genome Synteny and Collinearity, and its online service, to visualize the synteny and collinearity in the common graphical format, including both raster (JPEG, Bitmap, and PNG) and vector graphic (SVG, EPS, and PDF). Result. Users can upload sequence alignments from blast and collinearity relationship from the synteny analysis tools. The website can generate the vector or raster graphical results automatically. We also provide a java-based bytecode binary to enable the command-line execution.
          Article 0 comments Cited 18 times – based on 0 reviews     Review now
            Bookmark
            All references

            Author and article information

            Journal
            Journal ID (nlm-ta): Biomed Res Int
            Journal ID (iso-abbrev): Biomed Res Int
            Journal ID (publisher-id): BMRI
            Title: BioMed Research International
            Publisher: Hindawi Publishing Corporation
            ISSN (Print): 2314-6133
            ISSN (Electronic): 2314-6141
            Publication date (Print): 2016
            Publication date (Electronic): 14 September 2016
            Volume: 2016
            Electronic Location Identifier: 4948583
            Affiliations
            1School of Computer Science and Engineering, Southeast University, Nanjing, Jiangsu 211189, China
            2The Southern Modern Forestry Collaborative Innovation Center, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
            3College of Information Science and Technology, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
            4College of Forest Resources and Environment, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
            Author notes
            Author information
            http://orcid.org/0000-0002-7962-6668
            http://orcid.org/0000-0001-6273-6193
            http://orcid.org/0000-0001-7249-8352
            Article
            DOI: 10.1155/2016/4948583
            PMC ID: 5039299
            SO-VID: eb1f655f-c5eb-4bf0-b7c7-d82db3a5d21f
            Copyright © Copyright © 2016 Yiqing Xu et al.
            License:

            This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

            History
            Date received : 7 August 2016
            Date accepted : 24 August 2016
            Related
            Categories
            Subject: Corrigendum

            Data availability:

            Comments

            Comment on this article