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      A Flexible, Scalable and Efficient Algorithmic Framework for Primal Graphical Lasso

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          Abstract

          We propose a scalable, efficient and statistically motivated computational framework for Graphical Lasso (Friedman et al., 2007b) - a covariance regularization framework that has received significant attention in the statistics community over the past few years. Existing algorithms have trouble in scaling to dimensions larger than a thousand. Our proposal significantly enhances the state-of-the-art for such moderate sized problems and gracefully scales to larger problems where other algorithms become practically infeasible. This requires a few key new ideas. We operate on the primal problem and use a subtle variation of block-coordinate-methods which drastically reduces the computational complexity by orders of magnitude. We provide rigorous theoretical guarantees on the convergence and complexity of our algorithm and demonstrate the effectiveness of our proposal via experiments. We believe that our framework extends the applicability of Graphical Lasso to large-scale modern applications like bioinformatics, collaborative filtering and social networks, among others.

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          Most cited references15

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          Sparse inverse covariance estimation with the graphical lasso.

          We consider the problem of estimating sparse graphs by a lasso penalty applied to the inverse covariance matrix. Using a coordinate descent procedure for the lasso, we develop a simple algorithm--the graphical lasso--that is remarkably fast: It solves a 1000-node problem ( approximately 500,000 parameters) in at most a minute and is 30-4000 times faster than competing methods. It also provides a conceptual link between the exact problem and the approximation suggested by Meinshausen and Bühlmann (2006). We illustrate the method on some cell-signaling data from proteomics.
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            Smooth minimization of non-smooth functions

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              Latent Space Approaches to Social Network Analysis

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                Author and article information

                Journal
                25 October 2011
                Article
                1110.5508
                eb2f894f-92f1-4675-93a3-f700ba7e56d5

                http://arxiv.org/licenses/nonexclusive-distrib/1.0/

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