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      Long-Term Land Use Affects Phosphorus Speciation and the Composition of Phosphorus Cycling Genes in Agricultural Soils

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          Abstract

          Agriculturally-driven land transformation is increasing globally. Improving phosphorus (P) use efficiency to sustain optimum productivity in diverse ecosystems, based on knowledge of soil P dynamics, is also globally important in light of potential shortages of rock phosphate to manufacture P fertilizer. We investigated P chemical speciation and P cycling with solution 31P nuclear magnetic resonance, P K-edge X-ray absorption near-edge structure spectroscopy, phosphatase activity assays, and shotgun metagenomics in soil samples from long-term agricultural fields containing four different land-use types (native and tame grasslands, annual croplands, and roadside ditches). Across these land use types, native and tame grasslands showed high accumulation of organic P, principally orthophosphate monoesters, and high acid phosphomonoesterase activity but the lowest abundance of P cycling genes. The proportion of inositol hexaphosphates (IHP), especially the neo-IHP stereoisomer that likely originates from microbes rather than plants, was significantly increased in native grasslands than croplands. Annual croplands had the largest variances of soil P composition, and the highest potential capacity for P cycling processes based on the abundance of genes coding for P cycling processes. In contrast, roadside soils had the highest soil Olsen-P concentrations, lowest organic P, and highest tricalcium phosphate concentrations, which were likely facilitated by the neutral pH and high exchangeable Ca of these soils. Redundancy analysis demonstrated that IHP by NMR, potential phosphatase activity, Olsen-P, and pH were important P chemistry predictors of the P cycling bacterial community and functional gene composition. Combining chemical and metagenomics results provides important insights into soil P processes and dynamics in different land-use ecosystems.

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          Changes in Inorganic and Organic Soil Phosphorus Fractions Induced by Cultivation Practices and by Laboratory Incubations1

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            A wet oxidation procedure suitable for the determination of nitrogen and mineral nutrients in biological material

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              The Pho regulon: a huge regulatory network in bacteria

              One of the most important achievements of bacteria is its capability to adapt to the changing conditions of the environment. The competition for nutrients with other microorganisms, especially in the soil, where nutritional conditions are more variable, has led bacteria to evolve a plethora of mechanisms to rapidly fine-tune the requirements of the cell. One of the essential nutrients that are normally found in low concentrations in nature is inorganic phosphate (Pi). Bacteria, as well as other organisms, have developed several systems to cope for the scarcity of this nutrient. To date, the unique mechanism responding to Pi starvation known in detail is the Pho regulon, which is normally controlled by a two component system and constitutes one of the most sensible and efficient regulatory mechanisms in bacteria. Many new members of the Pho regulon have emerged in the last years in several bacteria; however, there are still many unknown questions regarding the activation and function of the whole system. This review describes the most important findings of the last three decades in relation to Pi regulation in bacteria, including: the PHO box, the Pi signaling pathway and the Pi starvation response. The role of the Pho regulon in nutritional regulation cross-talk, secondary metabolite production, and pathogenesis is discussed in detail.
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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                20 July 2018
                2018
                : 9
                : 1643
                Affiliations
                [1] 1College of Agronomy and Biotechnology, China Agricultural University , Beijing, China
                [2] 2Visiting Scientist, Agriculture and Agri-Food Canada, Swift Current Research and Development Centre , Swift Current, SK, Canada
                [3] 3Swift Current Research and Development Centre, Agriculture and Agri-Food Canada , Swift Current, SK, Canada
                [4] 4Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences , Beijing, China
                [5] 5Canadian Light Source, University of Saskatchewan , Saskatoon, SK, Canada
                [6] 6Stanford Magnetic Resonance Laboratory, Stanford University School of Medicine and ChEM-H-Stanford University , Stanford, CA, United States
                [7] 7Energy, Mining and Environment, National Research Council of Canada , Montreal, QC, Canada
                Author notes

                Edited by: Rosalind Jane Dodd, Bangor University, United Kingdom

                Reviewed by: John W. Moreau, University of Melbourne, Australia; Mustafa Yucel, Middle East Technical University, Turkey

                *Correspondence: Luke D. Bainard, luke.bainard@ 123456agr.gc.ca

                This article was submitted to Microbiological Chemistry and Geomicrobiology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2018.01643
                6065304
                30083148
                f026c33f-8c1a-4d1b-a262-17d53759fed9
                Copyright © 2018 Her Majesty the Queen in Right of Canada, as represented by the Minister of Agriculture and Agri-Food Canada.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 31 March 2018
                : 02 July 2018
                Page count
                Figures: 4, Tables: 4, Equations: 0, References: 71, Pages: 14, Words: 0
                Funding
                Funded by: Agriculture and Agri-Food Canada 10.13039/501100000040
                Funded by: Natural Sciences and Engineering Research Council of Canada 10.13039/501100000038
                Funded by: Western Economic Diversification Canada 10.13039/501100000045
                Funded by: Canadian Institutes of Health Research 10.13039/501100000024
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                land use,soil,phosphorus,solution nmr,xanes,shotgun metagenomics
                Microbiology & Virology
                land use, soil, phosphorus, solution nmr, xanes, shotgun metagenomics

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