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      TaqI polymorphism of the VDR gene: aspects related to the clinical behavior of COVID-19 in Cuban patients

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          Abstract

          Purpose

          To determine the relationship between the genotypes of the TaqI polymorphism of VDR gene and the clinical forms of COVID-19 in Cuban patients.

          Methods

          TaqI polymorphism was determined by the PCR in 104 Cuban patients, who suffered different clinical forms of COVID-19.

          Results

          There was a greater possibility of presenting symptomatic forms [OR = 2.081, 95% CI: 0.243–17.842], even severe [OR = 1.200, 95% CI: 0.217–6.638], related to the tt genotype.

          Conclusion

          There are signs of association between the risk of developing COVID-19 and the genotypes of the TaqI polymorphism of the VDR gene in the studied Cuban patients.

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          Most cited references13

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          Genomewide Association Study of Severe Covid-19 with Respiratory Failure

          Abstract Background There is considerable variation in disease behavior among patients infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes coronavirus disease 2019 (Covid-19). Genomewide association analysis may allow for the identification of potential genetic factors involved in the development of Covid-19. Methods We conducted a genomewide association study involving 1980 patients with Covid-19 and severe disease (defined as respiratory failure) at seven hospitals in the Italian and Spanish epicenters of the SARS-CoV-2 pandemic in Europe. After quality control and the exclusion of population outliers, 835 patients and 1255 control participants from Italy and 775 patients and 950 control participants from Spain were included in the final analysis. In total, we analyzed 8,582,968 single-nucleotide polymorphisms and conducted a meta-analysis of the two case–control panels. Results We detected cross-replicating associations with rs11385942 at locus 3p21.31 and with rs657152 at locus 9q34.2, which were significant at the genomewide level (P<5×10−8) in the meta-analysis of the two case–control panels (odds ratio, 1.77; 95% confidence interval [CI], 1.48 to 2.11; P=1.15×10−10; and odds ratio, 1.32; 95% CI, 1.20 to 1.47; P=4.95×10−8, respectively). At locus 3p21.31, the association signal spanned the genes SLC6A20, LZTFL1, CCR9, FYCO1, CXCR6 and XCR1. The association signal at locus 9q34.2 coincided with the ABO blood group locus; in this cohort, a blood-group–specific analysis showed a higher risk in blood group A than in other blood groups (odds ratio, 1.45; 95% CI, 1.20 to 1.75; P=1.48×10−4) and a protective effect in blood group O as compared with other blood groups (odds ratio, 0.65; 95% CI, 0.53 to 0.79; P=1.06×10−5). Conclusions We identified a 3p21.31 gene cluster as a genetic susceptibility locus in patients with Covid-19 with respiratory failure and confirmed a potential involvement of the ABO blood-group system. (Funded by Stein Erik Hagen and others.)
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            Vitamin D alleviates lipopolysaccharide-induced acute lung injury via regulation of the renin-angiotensin system

            Acute lung injury (ALI) and acute respiratory distress syndrome (ARDS) are the clinical manifestations of severe lung damage and respiratory failure. ALI and ARDS result are associated with high mortality in patients. At present, no effective treatments for ALI and ARDS exist. It is established that vitamin D exhibits anti-inflammatory effects, however, the specific effect of vitamin D on ALI remains largely unknown. The aim of the present study was to investigate whether, and by which mechanism, vitamin D alleviates lipopolysaccharide (LPS)-induced ALI. The results demonstrated that a vitamin D agonist, calcitriol, exhibited a beneficial effect on LPS-induced ALI in rats; calcitriol pretreatment significantly improved LPS-induced lung permeability, as determined using Evans blue dye. Results from reverse transcription-quantitative polymerase chain reaction, western blotting and ELISA analysis demonstrated that calcitriol also modulated the expression of members of the renin-angiotensin system (RAS), including angiotensin (Ang) I-converting enzymes (ACE and ACE2), renin and Ang II, which indicates that calcitriol may exert protective effects on LPS-induced lung injury, at least partially, by regulating the balance between the expression of members of the RAS. The results of the present study may provide novel targets for the future treatment of ALI.
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              Perspective: improving vitamin D status in the management of COVID-19

              Introduction A novel coronavirus disease 2019 (COVID-19) outbreak is a global dramatic pandemic that is immeasurably impacting our communities. Considering massive health and economic burden of the COVID-19 pandemic, any means by which to improve the condition of patients to accelerate recovery and to reduce the risk of deterioration and death would be considered of significant clinical and economical importance. In patients with COVID-19, SARS-CoV-2 virus binds to angiotensin converting enzyme 2 (ACE2) receptors in the respiratory tracts of infected patients to enter host cells [1]. At early stages of the disease, protective immune response is responsible for eliminating virus and, therefore, strategies to improve immune responses are of importance. As disease progresses, lung inflammation and fibrosis occur due to the release of pro-inflammatory cytokines, namely interleukin (IL)-1B and IL-18 by activated macrophages and type 1 T helper (Th1) immune cells [2]. Older patients and those that are immunocompromised are at the higher substantial risk [3]. Unfortunately, current knowledge gap on human immune response to SARS-CoV-2 is a critical barrier for treating the disease; however, potential immunomodulators may help alleviate severity and improve outcomes. Vitamin D is a secosteroid that has a wide spectrum of immunomodulatory, antiinflammatory antifibrotic, and antioxidant actions. Expression of inflammatory cytokine [e.g., IL-1α, IL-1β, tumor necrosis factor-α] was inhibited by vitamin D and its insufficiency was associated with overexpression of Th1 cytokines [4]. We have recently found that severe vitamin D deficiency (<25 nmol/L) is associated with disease progression and increased mortality in patients with autoimmune liver diseases [5]. This attribute has generated interest in vitamin D as a pathogenic factor that can be measured, monitored, and manipulated [6]. Vitamin D deficiency in COVID-19 high risk patients Patients with common variable immunodeficiency and bronchiectasis [7] as well as older adults [8] who are detected with mild to severe vitamin D deficiency, constitute high risk groups for getting severe illness from COVID-19. In addition, vitamin D has an important role in cardiovascular diseases and diabetes mellitus [9]. Vitamin D deficiency is also common in obesity [10] and smokers [11]. In Chicago, more than half of COVID-19 cases and around 70% of COVID-19 deaths were observed in African-American individuals [12] who are at the greater risk for vitamin D deficiency [13]. Among environmental factors, seasonal variation in sun exposure, geographic latitudes, air pollution, and darker skin influence in vitro vitamin D formation by sunlight [14]. Recent investigation of an association between temperature and latitude in the cities affected with COVID-19 indicated similarity in temperature and latitude among those highly affected areas [15]. This is an important notion that must be considered as vitamin D concentrations tended to be lower in high-latitude countries [16]. High prevalence of vitamin D deficiency and insufficiency was reported previously for those affected areas (Table 1); however, it should be acknowledged that divergent included populations may limit the generalizability of the study to other populations. Moreover, prevalence of vitamin D deficiency differs among various geographical regions of each country, which limit our ability to simplify the results. Table 1 Overview of vitamin D deficiency in regions highly affected by COVID-19. Country Population of study 25(OH) D status Prevalence China [30] 364 Chinese men aged 60–75 Deficiency: <50 nmol/L Insufficiency: 50–75 nmol/L 72% 22% Iran [31] Meta-analysis of 48 studies including 1911 men and 3683 women (excluding pregnant women, children, and patients) Deficiency: <50 nmol/L Pooled prevalence 55.21% in men 64.71 in women Italy and Spain [32] 420 patients ≥65 years old admitted to rehabilitation centers Deficiency: <50 nmol/L Insufficiency: 50–75 nmol/L 94.3% 81.2% United States [33] 26010 adults in the National Health and Nutrition Examination Survey 2001–2010 Deficiency: <50 nmol/L Insufficiency: 50–75 nmol/L 28.9% 41.4% France [34] 297 subjects studied in January and February 2015 Deficiency: <50 nmol/L 75.1% United Kingdom [35] 278 patients with chronic obstructive pulmonary disease, aged 41–92 years in London Deficiency: <50 nmol/L 61.5% Vitamin D and respiratory tract infections Epidemiological studies have reported that vitamin D deficiency is associated with viral respiratory tract infections and acute lung injury [17]. Vitamin D agonist, calcitriol, exhibited protective effects against acute lung injury by modulating the expression of members of the renin–angiotensin system such as ACE2 in lung tissue [18], supporting the role of vitamin D deficiency as a pathogenic factor in COVID-19. Vitamin D receptors (VDRs) are extensively distributed in respiratory epithelial cells and immune cells (B cell, T cell, macrophages, and monocytes). 25-hydroxyvitamin D (25OHD), the major circulating form of vitamin D can be converted to the active form (1,25-dihydroxyvitamin D) in the bronchial epithelium and immune cells [19]. The enzyme, 1α-Hydroxylase (CYP27B1), required for vitamin D activation, is induced by diverse stimuli, including cytokines and toll-like receptor ligands in the respiratory tract. However, adequate serum levels of 25(OH)D is required to increase levels of 1,25-dihydroxyvitamin D and consequently improve the immune response to respiratory virus infections [20]. Type-II pneumocytes are the primary target of coronaviruses and ACE2 receptors are highly expressed on these cells. Impaired function of type-II pneumocytes decrease the surfactant level and increase surface tension in COVID-19 [21]. Metabolites of 1,25-dihydroxyvitamin D have been reported to stimulate surfactant synthesis in alveolar type-II cells [22]. In vitro culture of human fetal and adult alveolar type-II cells with 1,25-dihydroxyvitamin D increased VDR and the expression of surfactant-associated protein B, a lipid-associated protein of the pulmonary surfactant [23], indicating the potential of vitamin D to reduce surface tension in COVID-19. In line with our objective to improve vitamin D status and its associated outcomes in patients with COVID-19, studies have shown treatment with high dose of 250,000–500,000 IU vitamin D to be safe in mechanically ventilated, critically ill patients and was associated with decreased hospital length of stay, improved ability of the blood to carry oxygen and increased hemoglobin levels [24, 25]. The risk of acute viral respiratory tract infections was twofold less if the vitamin D serum levels were ≥95 nmol/L (hazard ratio 0.51; 95% CI, 0.25–0.84; p < 0.0001) and the percentage of sick days was five times less (0.80% vs. 3.9%, p = 0.02) compared with the patients with levels <95 nmol/L [26]. Suggested plan of action To our knowledge, no study to date has measured vitamin D levels and performed high-dose vitamin D treatment in patients with COVID-19. High prevalence of vitamin D deficiency in elderly, smokers, patients with chronic diseases, and excess uptake by adipose tissue in obesity make investigations of its role as a therapeutic agent in COVID-19 conceivable. Accordingly, it should be necessary to measure serum 25(OH)D levels in all inpatient and outpatient populations with COVID-19 and in different stages of the disease to identify the importance of maintaining or promptly increasing circulating levels of 25(OH)D into the optimal range of 40–60 ng/ml (100–150 nmol/L) [27]. In this regard, relationship between baseline vitamin D status and disease severity, laboratory biochemical tests of white blood cell count, C-reactive protein, lymphocyte count, lactate dehydrogenase, IL-6, platelet count, albumin, and serum ferritin, required hospitalization and intensive care unit admission should be determined. This will help us to identify the ability of low vitamin D levels to risk stratify patients and allow for care to be provided to those who are at increased risk of progression. We acknowledge that the primary stage in treating vitamin D deficiency is to measure a baseline 25(OH)D serum levels and then consider the supplementation dose based on the target level and how rapidly that level must be reached. However, based on previous studies in patients with reparatory disease [28] and in order to quickly and safely increase serum 25(OH)D levels, we recommend patients with low circulating levels (below 50 nmol/L) should be offered vitamin D supplementation of 50,000 IU twice a week at the diagnosis (100,000 IU total). Overall, doses above 6000 IU/d are needed to achieve serum 25(OH)D concentrations above 100 nmol/L and intakes of vitamin D up to 15,000 IU/d were found to be safe [29]. Association between patients’ initial response to vitamin D supplementation with disease progression, recovery, and various clinical outcomes need to be investigated. Following 100,000 IU start dose, we propose patients to continue with the dose of 50,000 IU taken once a week for the second and third weeks. Following doses of 50,000 IU is suggested to achieve optimal levels of 25(OH)D in patients with poor baseline vitamin D status. Supplemented patients should be monitored to ensure their circulating vitamin levels are normalized and sustained for the duration of the COVID-19 pandemic. This suggested plan presents important challenges to identify how disease features and progression, hospital admission and length of stay, duration of mechanical ventilation, hospital mortality, and respiratory failure differ between the early responder and nonresponder groups. Conclusion Due to the lack of data, symptomatic management is used for COVID-19 infection including oxygen therapy and mechanical ventilation for those with severe infection. Considering the range of beneficial effects ascribed to vitamin D, it is safety and ease of administration, as well as direct effects of vitamin D on immune cell proliferation and activity, pulmonary ACE2 expression and reducing surface tension, evaluation of vitamin D supplementation as an adjuvant therapeutic intervention could be of substantial clinical and economic significance. Empiric intervention with vitamin D is a clinical decision that can be justified by low serum levels and the risk of impaired immune system. Importantly, improvement in circulating 25(OH)D levels opens possibilities for slowing disease progression or even improving survival of patients. In summary, given the high prevalence of vitamin D deficiency and in order to rapidly, safely, and significantly raise serum concentrations, high-dose vitamin D intervention with potential benefit in decreasing risk of COVID-19 severity and mortality is suggested, which is a safe and noninvasive treatment. Patients would take large doses of vitamin D for a week, followed by several thousand IU/d vitamin D for a period of 2 weeks. This will provide a quick and sustainable restoration of serum vitamin D levels, thus, potentially triggering an improvement in clinical status and prognosis. However, prospective clinical studies are required to address this speculation and overcome the obstacles in our current understanding of vitamin D role as an adjuvant therapy in patients with COVID-19.
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                Author and article information

                Contributors
                fornaris@infomed.sld.cu
                Journal
                Egypt J Med Hum Genet
                The Egyptian Journal of Medical Human Genetics
                Springer Berlin Heidelberg (Berlin/Heidelberg )
                1110-8630
                2090-2441
                30 November 2021
                30 November 2021
                2021
                : 22
                : 1
                : 83
                Affiliations
                [1 ]GRID grid.419266.e, ISNI 0000 0001 2106 4394, Facultad de Ciencias Médicas 10 de Octubre, , Universidad de Ciencias Médicas de La Habana, ; 10 de Octubre CP 10500, Havana, Cuba
                [2 ]National Center of Medical Genetics of Cuba, Havana, Cuba
                Author information
                http://orcid.org/0000-0002-2663-4138
                Article
                206
                10.1186/s43042-021-00206-4
                8629595
                38624675
                f2db9bb4-20cf-4b0f-b8ac-f983777e5714
                © The Author(s) 2021

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 14 May 2021
                : 16 September 2021
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                Correspondence
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                © The Author(s) 2021

                covid-19,genetic polymorphism,cuba,alleles,vitamin d,receptor
                covid-19, genetic polymorphism, cuba, alleles, vitamin d, receptor

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