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      Microbial ecology and biogeochemistry of continental Antarctic soils

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          Abstract

          The Antarctica Dry Valleys are regarded as the coldest hyperarid desert system on Earth. While a wide variety of environmental stressors including very low minimum temperatures, frequent freeze-thaw cycles and low water availability impose severe limitations to life, suitable niches for abundant microbial colonization exist. Antarctic desert soils contain much higher levels of microbial diversity than previously thought. Edaphic niches, including cryptic and refuge habitats, microbial mats and permafrost soils all harbor microbial communities which drive key biogeochemical cycling processes. For example, lithobionts (hypoliths and endoliths) possess a genetic capacity for nitrogen and carbon cycling, polymer degradation, and other system processes. Nitrogen fixation rates of hypoliths, as assessed through acetylene reduction assays, suggest that these communities are a significant input source for nitrogen into these oligotrophic soils. Here we review aspects of microbial diversity in Antarctic soils with an emphasis on functionality and capacity. We assess current knowledge regarding adaptations to Antarctic soil environments and highlight the current threats to Antarctic desert soil communities.

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          Most cited references69

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          On the rocks: the microbiology of Antarctic Dry Valley soils.

          The arid soils of the Antarctic Dry Valleys constitute some of the oldest, coldest, driest and most oligotrophic soils on Earth. Early studies suggested that the Dry Valley soils contained, at best, very low levels of viable microbiota. However, recent applications of molecular methods have revealed a dramatically contrasting picture - a very wide diversity of microbial taxa, many of which are uncultured and taxonomically unique, and a community that seems to be structured solely by abiotic processes. Here we review our understanding of these extreme Antarctic terrestrial microbial communities, with particular emphasis on the factors that are involved in their development, distribution and maintenance in these cold desert environments.
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            Cold-adapted enzymes.

            By far the largest proportion of the Earth's biosphere is comprised of organisms that thrive in cold environments (psychrophiles). Their ability to proliferate in the cold is predicated on a capacity to synthesize cold-adapted enzymes. These enzymes have evolved a range of structural features that confer a high level of flexibility compared to thermostable homologs. High flexibility, particularly around the active site, is translated into low-activation enthalpy, low-substrate affinity, and high specific activity at low temperatures. High flexibility is also accompanied by a trade-off in stability, resulting in heat lability and, in the few cases studied, cold lability. This review addresses the structure, function, and stability of cold-adapted enzymes, highlighting the challenges for immediate and future consideration. Because of the unique properties of cold-adapted enzymes, they are not only an important focus in extremophile biology, but also represent a valuable model for fundamental research into protein folding and catalysis.
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              Climate change alters ecological strategies of soil bacteria.

              The timing and magnitude of rainfall events are expected to change in future decades, resulting in longer drought periods and larger rainfall events. Although microbial community composition and function are both sensitive to changes in rainfall, it is unclear whether this is because taxa adopt strategies that maximise fitness under new regimes. We assessed whether bacteria exhibited phylogenetically conserved ecological strategies in response to drying-rewetting, and whether these strategies were altered by historical exposure to experimentally intensified rainfall patterns. By clustering relative abundance patterns, we identified three discrete ecological strategies and found that tolerance to drying-rewetting increased with exposure to intensified rainfall patterns. Changes in strategy were primarily due to changes in community composition, but also to strategy shifts within taxa. These moisture regime-selected ecological strategies may be predictable from disturbance history, and are likely to be linked to traits that influence the functional potential of microbial communities. © 2013 John Wiley & Sons Ltd/CNRS.
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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                09 April 2014
                2014
                : 5
                : 154
                Affiliations
                [1] 1Department of Genetics, Centre for Microbial Ecology and Genetics, University of Pretoria Pretoria, South Africa
                [2] 2School of Agriculture and Food Sciences, The University of Queensland Brisbane, QLD, Australia
                [3] 3School of Life Sciences, Heriot-Watt University Edinburgh, UK
                Author notes

                Edited by: Trevor C. Charles, University of Waterloo, Canada

                Reviewed by: William C. Nelson, University of Southern California, USA; Andrew M. Osborn, RMIT University, Australia; Lyle Whyte, McGill University, Canada

                *Correspondence: Don A. Cowan, Department of Genetics, Centre of Microbial Ecology and Genomics, University of Pretoria, Natural Sciences 2 Building, Pretoria 0028, South Africa e-mail: don.cowan@ 123456up.ac.za

                This article was submitted to Systems Microbiology, a section of the journal Frontiers in Microbiology.

                Article
                10.3389/fmicb.2014.00154
                3988359
                24782842
                f6cfad89-94a3-4972-b869-c4ac24448e44
                Copyright © 2014 Cowan, Makhalanyane, Dennis and Hopkins.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 14 January 2014
                : 22 March 2014
                Page count
                Figures: 12, Tables: 0, Equations: 0, References: 83, Pages: 10, Words: 7302
                Categories
                Microbiology
                Review Article

                Microbiology & Virology
                antarctica,microbial ecology,soil,hypoliths,nitrogen,carbon,adaptation,threats and impacts

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