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      Synergistic cooperation and crosstalk between MYD88 L265P and mutations that dysregulate CD79B and surface IgM

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          Abstract

          Wang et al. show cooperation between MYD88 L265P and CD79B mutations dysregulating B cell responses to self-antigen and differentiation into plasma cells. Their results reveal that CD79B and surface IgM constitute a rate-limiting checkpoint against MYD88 L265P , explaining the co-occurrence of MYD88 and CD79B mutations in human lymphomas.

          Abstract

          CD79B and MYD88 mutations are frequently and simultaneously detected in B cell malignancies. It is not known if these mutations cooperate or how crosstalk occurs. Here we analyze the consequences of CD79B and MYD88 L265P mutations individually and combined in normal activated mouse B lymphocytes. CD79B mutations alone increased surface IgM but did not enhance B cell survival, proliferation, or altered NF-κB responsive markers. Conversely, B cells expressing MYD88 L265P decreased surface IgM coupled with accumulation of endoglycosidase H–sensitive IgM intracellularly, resembling the trafficking block in anergic B cells repeatedly stimulated by self-antigen. Mutation or overexpression of CD79B counteracted the effect of MYD88 L265P . In B cells chronically stimulated by self-antigen, CD79B and MYD88 L265P mutations in combination, but not individually, blocked peripheral deletion and triggered differentiation into autoantibody secreting plasmablasts. These results reveal that CD79B and surface IgM constitute a rate-limiting checkpoint against B cell dysregulation by MYD88 L265P and provide an explanation for the co-occurrence of MYD88 and CD79B mutations in lymphomas.

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          Most cited references42

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          Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans.

          Upstream ORFs (uORFs) are mRNA elements defined by a start codon in the 5' UTR that is out-of-frame with the main coding sequence. Although uORFs are present in approximately half of human and mouse transcripts, no study has investigated their global impact on protein expression. Here, we report that uORFs correlate with significantly reduced protein expression of the downstream ORF, based on analysis of 11,649 matched mRNA and protein measurements from 4 published mammalian studies. Using reporter constructs to test 25 selected uORFs, we estimate that uORFs typically reduce protein expression by 30-80%, with a modest impact on mRNA levels. We additionally identify polymorphisms that alter uORF presence in 509 human genes. Finally, we report that 5 uORF-altering mutations, detected within genes previously linked to human diseases, dramatically silence expression of the downstream protein. Together, our results suggest that uORFs influence the protein expression of thousands of mammalian genes and that variation in these elements can influence human phenotype and disease.
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            MYD88 L265P somatic mutation in Waldenström's macroglobulinemia.

            Waldenström's macroglobulinemia is an incurable, IgM-secreting lymphoplasmacytic lymphoma (LPL). The underlying mutation in this disorder has not been delineated. We performed whole-genome sequencing of bone marrow LPL cells in 30 patients with Waldenström's macroglobulinemia, with paired normal-tissue and tumor-tissue sequencing in 10 patients. Sanger sequencing was used to validate the findings in samples from an expanded cohort of patients with LPL, those with other B-cell disorders that have some of the same features as LPL, and healthy donors. Among the patients with Waldenström's macroglobulinemia, a somatic variant (T→C) in LPL cells was identified at position 38182641 at 3p22.2 in the samples from all 10 patients with paired tissue samples and in 17 of 20 samples from patients with unpaired samples. This variant predicted an amino acid change (L265P) in MYD88, a mutation that triggers IRAK-mediated NF-κB signaling. Sanger sequencing identified MYD88 L265P in tumor samples from 49 of 54 patients with Waldenström's macroglobulinemia and in 3 of 3 patients with non-IgM-secreting LPL (91% of all patients with LPL). MYD88 L265P was absent in paired normal tissue samples from patients with Waldenström's macroglobulinemia or non-IgM LPL and in B cells from healthy donors and was absent or rarely expressed in samples from patients with multiple myeloma, marginal-zone lymphoma, or IgM monoclonal gammopathy of unknown significance. Inhibition of MYD88 signaling reduced IκBα and NF-κB p65 phosphorylation, as well as NF-κB nuclear staining, in Waldenström's macroglobulinemia cells expressing MYD88 L265P. Somatic variants in ARID1A in 5 of 30 patients (17%), leading to a premature stop or frameshift, were also identified and were associated with an increased disease burden. In addition, 2 of 3 patients with Waldenström's macroglobulinemia who had wild-type MYD88 had somatic variants in MLL2. MYD88 L265P is a commonly recurring mutation in patients with Waldenström's macroglobulinemia that can be useful in differentiating Waldenström's macroglobulinemia and non-IgM LPL from B-cell disorders that have some of the same features. (Funded by the Peter and Helen Bing Foundation and others.).
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              Retrovirus-mediated gene transfer and expression cloning: powerful tools in functional genomics.

              Most of the human genome has now been sequenced and about 30,000 potential open reading frames have been identified, indicating that we use these 30,000 genes to functionally organize our biologic activities. However, functions of many genes are still unknown despite intensive efforts using bioinformatics as well as transgenic and knockout mice. Retrovirus-mediated gene transfer is a powerful tool that can be used to understand gene functions. We have developed a variety of retrovirus vectors and efficient packaging cell lines that have facilitated the development of efficient functional expression cloning methods. In this review, we describe retrovirus-mediated strategies used for investigation of gene functions and function-based screening strategies.
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                Author and article information

                Journal
                J Exp Med
                J. Exp. Med
                jem
                jem
                The Journal of Experimental Medicine
                The Rockefeller University Press
                0022-1007
                1540-9538
                04 September 2017
                : 214
                : 9
                : 2759-2776
                Affiliations
                [1 ]Australian Cancer Research Foundation Department of Cancer Biology and Therapeutics, The John Curtin School of Medical Research, The Australian National University, Canberra, Australia
                [2 ]Garvan Institute of Medical Research, Sydney, Australia
                [3 ]Lymphoid Malignancies Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD
                Author notes
                Correspondence to Christopher C. Goodnow: c.goodnow@ 123456garvan.org.au ;
                [*]

                C.C. Goodnow and K. Horikawa contributed equally to this paper.

                J.Q. Wang’s present address is Lymphoid Malignancies Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD.

                Author information
                http://orcid.org/0000-0001-8534-255X
                http://orcid.org/0000-0002-8557-6433
                http://orcid.org/0000-0002-5951-2137
                http://orcid.org/0000-0001-5296-6155
                http://orcid.org/0000-0002-7381-9450
                Article
                20161454
                10.1084/jem.20161454
                5584117
                28701369
                f8bd4883-8531-4731-8d4f-88bb0c8127c5
                © 2017 Wang et al.

                This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms/). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 4.0 International license, as described at https://creativecommons.org/licenses/by-nc-sa/4.0/).

                History
                : 01 September 2016
                : 30 April 2017
                : 13 June 2017
                Funding
                Funded by: Australian National University, DOI http://dx.doi.org/10.13039/501100000995;
                Funded by: Korea Health Industry Development Institute, DOI http://dx.doi.org/10.13039/501100003710;
                Award ID: HI15C1075
                Funded by: National Health and Medical Research Council, DOI http://dx.doi.org/10.13039/501100000925;
                Award ID: 585490
                Funded by: NHMRC, DOI http://dx.doi.org/10.13039/501100000925;
                Award ID: 1081858
                Funded by: NHMRC, DOI http://dx.doi.org/10.13039/501100000925;
                Award ID: 1016953
                Award ID: 1113904
                Award ID: 1086770
                Categories
                Research Articles
                Article
                317
                304

                Medicine
                Medicine

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