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      The Deep Subsurface Biosphere in Igneous Ocean Crust: Frontier Habitats for Microbiological Exploration

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          Abstract

          We discuss ridge flank environments in the ocean crust as habitats for subseafloor microbial life. Oceanic ridge flanks, areas far from the magmatic and tectonic influence of seafloor spreading, comprise one of the largest and least explored microbial habitats on the planet. We describe the nature of selected ridge flank crustal environments, and present a framework for delineating a continuum of conditions and processes that are likely to be important for defining subseafloor microbial "provinces." The basis for this framework is three governing conditions that help to determine the nature of subseafloor biomes: crustal age, extent of fluid flow, and thermal state. We present a brief overview of subseafloor conditions, within the context of these three characteristics, for five field sites where microbial studies have been done, are underway, or have been proposed. Technical challenges remain and likely will limit progress in studies of microbial ridge flank ecosystems, which is why it is vital to select and design future studies so as to leverage as much general understanding as possible from work focused at a small number of sites. A characterization framework such that as presented in this paper, perhaps including alternative or additional physical or chemical characteristics, is essential for achieving the greatest benefit from multidisciplinary microbial investigations of oceanic ridge flanks.

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          An analysis of the variation of ocean floor bathymetry and heat flow with age

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            Mid-Ocean Ridge Hydrothermal Fluxes and the Chemical Composition of the Ocean

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              Microbial ecology of the dark ocean above, at, and below the seafloor.

              The majority of life on Earth--notably, microbial life--occurs in places that do not receive sunlight, with the habitats of the oceans being the largest of these reservoirs. Sunlight penetrates only a few tens to hundreds of meters into the ocean, resulting in large-scale microbial ecosystems that function in the dark. Our knowledge of microbial processes in the dark ocean-the aphotic pelagic ocean, sediments, oceanic crust, hydrothermal vents, etc.-has increased substantially in recent decades. Studies that try to decipher the activity of microorganisms in the dark ocean, where we cannot easily observe them, are yielding paradigm-shifting discoveries that are fundamentally changing our understanding of the role of the dark ocean in the global Earth system and its biogeochemical cycles. New generations of researchers and experimental tools have emerged, in the last decade in particular, owing to dedicated research programs to explore the dark ocean biosphere. This review focuses on our current understanding of microbiology in the dark ocean, outlining salient features of various habitats and discussing known and still unexplored types of microbial metabolism and their consequences in global biogeochemical cycling. We also focus on patterns of microbial diversity in the dark ocean and on processes and communities that are characteristic of the different habitats.
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                Author and article information

                Journal
                Front Microbiol
                Front. Microbio.
                Frontiers in Microbiology
                Frontiers Research Foundation
                1664-302X
                23 November 2011
                03 February 2012
                2012
                : 3
                : 8
                Affiliations
                [1] 1simpleDepartment of Biological Sciences, University of Southern California Los Angeles, CA, USA
                [2] 2simpleDepartment of Earth and Planetary Sciences, University of California Santa Cruz Santa Cruz, CA, USA
                [3] 3simpleGlobal Undersea Research Unit, University of Alaska Fairbanks Fairbanks, CA, USA
                Author notes

                Edited by: Andreas Teske, University of North Carolina at Chapel Hill, USA

                Reviewed by: John Stolz, Duquesne University, USA; Jens Kallmeyer, University of Potsdam, Germany

                *Correspondence: Katrina J. Edwards, Department of Biological Sciences, Division of Marine Environmental Biology, 3616 Trousdale Blvd 91030, AHF 203, Los Angeles, CA, USA. e-mail: kje@ 123456usc.edu

                This article was submitted to Frontiers in Extreme Microbiology, a specialty of Frontiers in Microbiology.

                Article
                10.3389/fmicb.2012.00008
                3271274
                22347212
                fc7b65e8-43f6-4b89-8a2c-d330cb851b6e
                Copyright © 2012 Edwards, Fisher and Wheat.

                This is an open-access article distributed under the terms of the Creative Commons Attribution Non Commercial License, which permits non-commercial use, distribution, and reproduction in other forums, provided the original authors and source are credited.

                History
                : 04 November 2011
                : 05 January 2012
                Page count
                Figures: 3, Tables: 1, Equations: 0, References: 75, Pages: 11, Words: 11036
                Categories
                Microbiology
                Hypothesis and Theory

                Microbiology & Virology
                basalt,marine,microbiology,ocean crust,provinces,deep subsurface,ecology
                Microbiology & Virology
                basalt, marine, microbiology, ocean crust, provinces, deep subsurface, ecology

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