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      Automatic Evidence Retrieval for Systematic Reviews

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          Abstract

          Background

          Snowballing involves recursively pursuing relevant references cited in the retrieved literature and adding them to the search results. Snowballing is an alternative approach to discover additional evidence that was not retrieved through conventional search. Snowballing’s effectiveness makes it best practice in systematic reviews despite being time-consuming and tedious.

          Objective

          Our goal was to evaluate an automatic method for citation snowballing’s capacity to identify and retrieve the full text and/or abstracts of cited articles.

          Methods

          Using 20 review articles that contained 949 citations to journal or conference articles, we manually searched Microsoft Academic Search (MAS) and identified 78.0% (740/949) of the cited articles that were present in the database. We compared the performance of the automatic citation snowballing method against the results of this manual search, measuring precision, recall, and F 1 score.

          Results

          The automatic method was able to correctly identify 633 (as proportion of included citations: recall=66.7%, F 1 score=79.3%; as proportion of citations in MAS: recall=85.5%, F 1 score=91.2%) of citations with high precision (97.7%), and retrieved the full text or abstract for 490 (recall=82.9%, precision=92.1%, F 1 score=87.3%) of the 633 correctly retrieved citations.

          Conclusions

          The proposed method for automatic citation snowballing is accurate and is capable of obtaining the full texts or abstracts for a substantial proportion of the scholarly citations in review articles. By automating the process of citation snowballing, it may be possible to reduce the time and effort of common evidence surveillance tasks such as keeping trial registries up to date and conducting systematic reviews.

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          Most cited references17

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          Systematic review automation technologies

          Systematic reviews, a cornerstone of evidence-based medicine, are not produced quickly enough to support clinical practice. The cost of production, availability of the requisite expertise and timeliness are often quoted as major contributors for the delay. This detailed survey of the state of the art of information systems designed to support or automate individual tasks in the systematic review, and in particular systematic reviews of randomized controlled clinical trials, reveals trends that see the convergence of several parallel research projects. We surveyed literature describing informatics systems that support or automate the processes of systematic review or each of the tasks of the systematic review. Several projects focus on automating, simplifying and/or streamlining specific tasks of the systematic review. Some tasks are already fully automated while others are still largely manual. In this review, we describe each task and the effect that its automation would have on the entire systematic review process, summarize the existing information system support for each task, and highlight where further research is needed for realizing automation for the task. Integration of the systems that automate systematic review tasks may lead to a revised systematic review workflow. We envisage the optimized workflow will lead to system in which each systematic review is described as a computer program that automatically retrieves relevant trials, appraises them, extracts and synthesizes data, evaluates the risk of bias, performs meta-analysis calculations, and produces a report in real time.
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                Author and article information

                Contributors
                Journal
                J Med Internet Res
                J. Med. Internet Res
                JMIR
                Journal of Medical Internet Research
                JMIR Publications Inc. (Toronto, Canada )
                1439-4456
                1438-8871
                October 2014
                01 October 2014
                : 16
                : 10
                : e223
                Affiliations
                [1] 1Centre for Health Informatics Australian Institute of Health Innovation University of New South Wales Kensington NSWAustralia
                Author notes
                Corresponding Author: Guy Tsafnat guyt@ 123456unsw.edu.au
                Author information
                http://orcid.org/0000-0003-0352-5585
                http://orcid.org/0000-0002-3553-3611
                http://orcid.org/0000-0002-1720-8209
                http://orcid.org/0000-0003-4353-2026
                Article
                v16i10e223
                10.2196/jmir.3369
                4211030
                25274020
                0268518c-c71d-4af1-9467-a717237939a4
                ©Miew Keen Choong, Filippo Galgani, Adam G Dunn, Guy Tsafnat. Originally published in the Journal of Medical Internet Research (http://www.jmir.org), 01.10.2014.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/2.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in the Journal of Medical Internet Research, is properly cited. The complete bibliographic information, a link to the original publication on http://www.jmir.org/, as well as this copyright and license information must be included.

                History
                : 14 July 2014
                : 07 August 2014
                : 18 August 2014
                : 09 September 2014
                Categories
                Original Paper
                Original Paper

                Medicine
                evidence-based medicine,medical informatics,information storage and retrieval
                Medicine
                evidence-based medicine, medical informatics, information storage and retrieval

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