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      Toward single-molecule nanomechanical mass spectrometry

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          Abstract

          Mass spectrometry (MS) provides rapid and quantitative identification of protein species with relatively low sample consumption. Yet with the trend toward biological analysis at increasingly smaller scales, ultimately down to the volume of an individual cell, MS with few-to-single molecule sensitivity will be required. Nanoelectromechanical systems (NEMS) provide unparalleled mass sensitivity, which is now sufficient for the detection of individual molecular species in real time. Here we report the first demonstration of MS based on single-biological-molecule detection with NEMS. In our NEMS-MS system, nanoparticles and protein species are introduced by electrospray injection from fluid phase in ambient conditions into vacuum and subsequently delivered to the NEMS detector by hexapole ion optics. Precipitous frequency shifts, proportional to the mass, are recorded in real time as analytes adsorb, one-by-one, onto a phase-locked, ultrahigh frequency NEMS resonator. These first NEMS-MS spectra, obtained with modest mass sensitivity from only several hundred mass adsorption events, presage the future capabilities of this approach. We also outline the substantial improvements that are feasible in the near term, some of which are unique to NEMS-MS.

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          Most cited references28

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          Single spin detection by magnetic resonance force microscopy.

          Magnetic resonance imaging (MRI) is well known as a powerful technique for visualizing subsurface structures with three-dimensional spatial resolution. Pushing the resolution below 1 micro m remains a major challenge, however, owing to the sensitivity limitations of conventional inductive detection techniques. Currently, the smallest volume elements in an image must contain at least 10(12) nuclear spins for MRI-based microscopy, or 10(7) electron spins for electron spin resonance microscopy. Magnetic resonance force microscopy (MRFM) was proposed as a means to improve detection sensitivity to the single-spin level, and thus enable three-dimensional imaging of macromolecules (for example, proteins) with atomic resolution. MRFM has also been proposed as a qubit readout device for spin-based quantum computers. Here we report the detection of an individual electron spin by MRFM. A spatial resolution of 25 nm in one dimension was obtained for an unpaired spin in silicon dioxide. The measured signal is consistent with a model in which the spin is aligned parallel or anti-parallel to the effective field, with a rotating-frame relaxation time of 760 ms. The long relaxation time suggests that the state of an individual spin can be monitored for extended periods of time, even while subjected to a complex set of manipulations that are part of the MRFM measurement protocol.
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            Stochastic protein expression in individual cells at the single molecule level.

            In a living cell, gene expression--the transcription of DNA to messenger RNA followed by translation to protein--occurs stochastically, as a consequence of the low copy number of DNA and mRNA molecules involved. These stochastic events of protein production are difficult to observe directly with measurements on large ensembles of cells owing to lack of synchronization among cells. Measurements so far on single cells lack the sensitivity to resolve individual events of protein production. Here we demonstrate a microfluidic-based assay that allows real-time observation of the expression of beta-galactosidase in living Escherichia coli cells with single molecule sensitivity. We observe that protein production occurs in bursts, with the number of molecules per burst following an exponential distribution. We show that the two key parameters of protein expression--the burst size and frequency--can be either determined directly from real-time monitoring of protein production or extracted from a measurement of the steady-state copy number distribution in a population of cells. Application of this assay to probe gene expression in individual budding yeast and mouse embryonic stem cells demonstrates its generality. Many important proteins are expressed at low levels, and are thus inaccessible by current genomic and proteomic techniques. This microfluidic single cell assay opens up possibilities for system-wide characterization of the expression of these low copy number proteins.
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              Approaching the quantum limit of a nanomechanical resonator.

              By coupling a single-electron transistor to a high-quality factor, 19.7-megahertz nanomechanical resonator, we demonstrate position detection approaching that set by the Heisenberg uncertainty principle limit. At millikelvin temperatures, position resolution a factor of 4.3 above the quantum limit is achieved and demonstrates the near-ideal performance of the single-electron transistor as a linear amplifier. We have observed the resonator's thermal motion at temperatures as low as 56 millikelvin, with quantum occupation factors of NTH = 58. The implications of this experiment reach from the ultimate limits of force microscopy to qubit readout for quantum information devices.
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                Author and article information

                Journal
                101283273
                34218
                Nat Nanotechnol
                Nat Nanotechnol
                Nature nanotechnology
                1748-3387
                1748-3395
                22 June 2009
                21 June 2009
                July 2009
                02 December 2013
                : 4
                : 7
                : 10.1038/nnano.2009.152
                Affiliations
                [1 ]Kavli Nanoscience Institute, California Institute of Technology, MC 114-36, Pasadena, CA 91125 USA
                [2 ]National Institute for Nanotechnology, National Research Council of Canada, Edmonton, Alberta T6G 2M9 Canada
                Author notes
                []Corresponding author: roukes@ 123456caltech.edu
                [*]

                These authors contributed equally to this work.

                Article
                NIHMS118076
                10.1038/nnano.2009.152
                3846395
                19581898
                0f196c51-7333-4e48-ab91-783967e10fc7
                History
                Funding
                Funded by: National Institute of General Medical Sciences : NIGMS
                Award ID: R21 GM072898-03 || GM
                Funded by: National Institute of General Medical Sciences : NIGMS
                Award ID: R21 GM072898-02 || GM
                Funded by: National Institute of General Medical Sciences : NIGMS
                Award ID: R21 GM072898-01 || GM
                Categories
                Article

                Nanotechnology
                Nanotechnology

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