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      Functional compensation precedes recovery of tissue mass following acute liver injury

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          Abstract

          The liver plays a central role in metabolism, protein synthesis and detoxification. It possesses unique regenerative capacity upon injury. While many factors regulating cellular proliferation during liver repair have been identified, the mechanisms by which the injured liver maintains vital functions prior to tissue recovery are unknown. Here, we identify a new phase of functional compensation following acute liver injury that occurs prior to cellular proliferation. By coupling single-cell RNA-seq with in situ transcriptional analyses in two independent murine liver injury models, we discover adaptive reprogramming to ensure expression of both injury response and core liver function genes dependent on macrophage-derived WNT/β-catenin signaling. Interestingly, transcriptional compensation is most prominent in non-proliferating cells, clearly delineating two temporally distinct phases of liver recovery. Overall, our work describes a mechanism by which the liver maintains essential physiological functions prior to cellular reconstitution and characterizes macrophage-derived WNT signals required for this compensation.

          Abstract

          The liver possesses the ability to regenerate following sudden injury. Here, the authors use single-cell RNA-sequencing and in situ transcriptional analyses to identify a new phase of liver regeneration in mice aimed at maintaining essential functions throughout the regenerative process.

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          Most cited references49

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          Liver regeneration.

          Liver regeneration after partial hepatectomy is a very complex and well-orchestrated phenomenon. It is carried out by the participation of all mature liver cell types. The process is associated with signaling cascades involving growth factors, cytokines, matrix remodeling, and several feedbacks of stimulation and inhibition of growth related signals. Liver manages to restore any lost mass and adjust its size to that of the organism, while at the same time providing full support for body homeostasis during the entire regenerative process. In situations when hepatocytes or biliary cells are blocked from regeneration, these cell types can function as facultative stem cells for each other.
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            In vitro expansion of single Lgr5+ liver stem cells induced by Wnt-driven regeneration.

            The Wnt target gene Lgr5 (leucine-rich-repeat-containing G-protein-coupled receptor 5) marks actively dividing stem cells in Wnt-driven, self-renewing tissues such as small intestine and colon, stomach and hair follicles. A three-dimensional culture system allows long-term clonal expansion of single Lgr5(+) stem cells into transplantable organoids (budding cysts) that retain many characteristics of the original epithelial architecture. A crucial component of the culture medium is the Wnt agonist RSPO1, the recently discovered ligand of LGR5. Here we show that Lgr5-lacZ is not expressed in healthy adult liver, however, small Lgr5-LacZ(+) cells appear near bile ducts upon damage, coinciding with robust activation of Wnt signalling. As shown by mouse lineage tracing using a new Lgr5-IRES-creERT2 knock-in allele, damage-induced Lgr5(+) cells generate hepatocytes and bile ducts in vivo. Single Lgr5(+) cells from damaged mouse liver can be clonally expanded as organoids in Rspo1-based culture medium over several months. Such clonal organoids can be induced to differentiate in vitro and to generate functional hepatocytes upon transplantation into Fah(-/-) mice. These findings indicate that previous observations concerning Lgr5(+) stem cells in actively self-renewing tissues can also be extended to damage-induced stem cells in a tissue with a low rate of spontaneous proliferation.
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              Goals and targets for personalized therapy for HCC

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                Author and article information

                Contributors
                shalek@mit.edu
                wgoessling@partners.org
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                19 November 2020
                19 November 2020
                2020
                : 11
                : 5785
                Affiliations
                [1 ]Genetics Division, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115 USA
                [2 ]GRID grid.116068.8, ISNI 0000 0001 2341 2786, Institute of Medical Engineering & Science (IMES), Department of Chemistry, and Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, ; Cambridge, MA 02139 USA
                [3 ]GRID grid.66859.34, Broad Institute of MIT and Harvard, ; Cambridge, MA 02142 USA
                [4 ]GRID grid.461656.6, ISNI 0000 0004 0489 3491, Ragon Institute of MGH, MIT and Harvard, ; Cambridge, MA 02139 USA
                [5 ]GRID grid.21925.3d, ISNI 0000 0004 1936 9000, Department of Pathology, , University of Pittsburgh, School of Medicine; and Pittsburgh Liver Research Center, University of Pittsburgh and University of Pittsburgh Medical Center, ; Pittsburgh, PA 15261 USA
                [6 ]GRID grid.428999.7, ISNI 0000 0001 2353 6535, Imaging and Modeling Unit, Institut Pasteur, UMR 3691CNRS, C3BI USR 3756 IP CNRS, ; Paris, France
                [7 ]GRID grid.412016.0, ISNI 0000 0001 2177 6375, Department of Pharmacology, , Toxicology, and Therapeutics, University of Kansas Medical Center, ; Kansas City, KS 66160 USA
                [8 ]GRID grid.413735.7, ISNI 0000 0004 0475 2760, Harvard-MIT Division of Health Sciences and Technology, ; Boston, MA 02115 USA
                [9 ]GRID grid.65499.37, ISNI 0000 0001 2106 9910, Dana-Farber Cancer Institute, ; Boston, MA 02215 USA
                [10 ]GRID grid.38142.3c, ISNI 000000041936754X, Harvard Stem Cell Institute, ; Cambridge, MA 02134 USA
                [11 ]GRID grid.32224.35, ISNI 0000 0004 0386 9924, Division of Gastroenterology, , Massachusetts General Hospital, Harvard Medical School, ; Boston, MA 02114 USA
                Author information
                http://orcid.org/0000-0003-3800-3453
                http://orcid.org/0000-0001-8840-7363
                http://orcid.org/0000-0003-0140-2426
                http://orcid.org/0000-0003-1981-359X
                http://orcid.org/0000-0001-5964-0836
                http://orcid.org/0000-0002-4691-6933
                http://orcid.org/0000-0002-6079-5939
                http://orcid.org/0000-0002-8437-3378
                http://orcid.org/0000-0002-9622-4396
                http://orcid.org/0000-0002-6741-7164
                http://orcid.org/0000-0001-5670-8778
                http://orcid.org/0000-0001-9972-1569
                Article
                19558
                10.1038/s41467-020-19558-3
                7677389
                33214549
                151a7e45-f6e8-4b4d-9d13-ef04d5e30d42
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 3 October 2019
                : 12 October 2020
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                © The Author(s) 2020

                Uncategorized
                fluorescence in situ hybridization,transcriptomics
                Uncategorized
                fluorescence in situ hybridization, transcriptomics

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