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      Incidence and spectrum of yeast species isolated from the oral cavity of Iranian patients suffering from hematological malignancies

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          ABSTRACT

          Background: Oral candidiasis (OC) has a profound effect on the life quality of immunocompromised patients, such as those undergoing chemotherapy. Objective: Systematic investigation of clinical outcome and microbiological features of yeast isolates recovered from the oral cavity of 150 Iranian patients with hematological malignancies. Design: MALDI-TOF MS, 21-plex PCR, and rDNA sequencing were used for identification. Antifungal susceptibility testing (broth microdilution, CLSI M27-A3/S4) and genotypic diversity of yeast isolates (amplified fragment length polymorphism) were assessed. Results: Nystatin treatment resulted in 70% therapeutic failure and administration of 150 mg fluconazole (FLZ) + nystatin for patients with OC relapse showed 70% clinical failure. Previous history of OC was significantly correlated with FLZ treatment requirement and nystatin failure ( P = 0.005, α < 0.05).  Candida albicans (80.3%) and  Kluyveromyces marxianus ( C. kefyr) (12.7%) were the two most prevalent yeast species isolated. FLZ and AMB exhibited the highest geometric mean values. 21-PCR showed 98.9% agreement with MALDI-TOF MS.  K. marxianus isolates had the same genotype, while  C. albicans isolates grouped in 15 genotypes. Conclusions: Marked rate of therapeutic failure of nystatin necessitated OC treatment with systemic antifungals.  K. marxianus was the second most prevalent yeast and 21-plex PCR could be considered as an inexpensive identification tool.

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          One fungus, which genes? Development and assessment of universal primers for potential secondary fungal DNA barcodes

          The aim of this study was to assess potential candidate gene regions and corresponding universal primer pairs as secondary DNA barcodes for the fungal kingdom, additional to ITS rDNA as primary barcode. Amplification efficiencies of 14 (partially) universal primer pairs targeting eight genetic markers were tested across > 1 500 species (1 931 strains or specimens) and the outcomes of almost twenty thousand (19 577) polymerase chain reactions were evaluated. We tested several well-known primer pairs that amplify: i) sections of the nuclear ribosomal RNA gene large subunit (D1–D2 domains of 26/28S); ii) the complete internal transcribed spacer region (ITS1/2); iii) partial β -tubulin II (TUB2); iv) γ-actin (ACT); v) translation elongation factor 1-α (TEF1α); and vi) the second largest subunit of RNA-polymerase II (partial RPB2, section 5–6). Their PCR efficiencies were compared with novel candidate primers corresponding to: i) the fungal-specific translation elongation factor 3 (TEF3); ii) a small ribosomal protein necessary for t-RNA docking; iii) the 60S L10 (L1) RP; iv) DNA topoisomerase I (TOPI); v) phosphoglycerate kinase (PGK); vi) hypothetical protein LNS2; and vii) alternative sections of TEF1α. Results showed that several gene sections are accessible to universal primers (or primers universal for phyla) yielding a single PCR-product. Barcode gap and multi-dimensional scaling analyses revealed that some of the tested candidate markers have universal properties providing adequate infra- and inter-specific variation that make them attractive barcodes for species identification. Among these gene sections, a novel high fidelity primer pair for TEF1α, already widely used as a phylogenetic marker in mycology, has potential as a supplementary DNA barcode with superior resolution to ITS. Both TOPI and PGK show promise for the Ascomycota, while TOPI and LNS2 are attractive for the Pucciniomycotina, for which universal primers for ribosomal subunits often fail.
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            Management of oral mucositis in patients who have cancer.

            Oral mucositis is a clinically important and sometimes dose-limiting complication of cancer therapy. Mucositis lesions can be painful, affect nutrition and quality of life, and have a significant economic impact. The pathogenesis of oral mucositis is multifactorial and complex. This review discusses the morbidity, economic impact, pathogenesis and clinical course of mucositis. Current clinical management of oral mucositis is largely focused on palliative measures such as pain management, nutritional support and maintenance of good oral hygiene. However, several promising therapeutic agents are in various stages of clinical development for the management of oral mucositis. These agents are discussed in the context of recently updated evidence-based clinical management guidelines.
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              Echinocandin resistance: an emerging clinical problem?

              Echinocandin resistance in Candida is a great concern, as the echinocandin drugs are recommended as first-line therapy for patients with invasive candidiasis. Here, we review recent advances in our understanding of the epidemiology, underlying mechanisms, methods for detection and clinical implications.
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                Author and article information

                Journal
                J Oral Microbiol
                J Oral Microbiol
                ZJOM
                zjom20
                Journal of Oral Microbiology
                Taylor & Francis
                2000-2297
                2019
                12 April 2019
                : 11
                : 1
                : 1601061
                Affiliations
                [a ]Department of Yeasts , Westerdijk Fungal Biodiversity Institute , Utrecht, Netherlands
                [b ]Department of Medical Mycology and Parasitology, School of Medicine, Iran University of Medical Sciences , Tehran, Iran
                [c ]Microbial Biotechnology Research Center (MBiRC), Iran University of Medical Sciences , Tehran, Iran
                [d ]Department of Dermatology, Shanghai Key Laboratory of Molecular Medical Mycology, Shanghai Institute of Medical Mycology, Shanghai Changzheng Hospital, Second Military Medical University , Shanghai, China
                [e ]Department of infectious diseases and Tropical Medicine, Faculty of Medicine, Tehran University of Medical Sciences , Tehran, Iran
                [f ]Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam , Amsterdam, Netherlands
                Author notes
                CONTACT Maryam Roudbary m_roudbary@ 123456yahoo.com Department of Medical Mycology and Parasitology, School of Medicine, Iran University of Medical Sciences , Tehran, Iran; Pan Weihua panweihua@ 123456smmu.edu.cn Department of Dermatology, Shanghai Key Laboratory of Molecular Medical Mycology, Shanghai Institute of Medical Mycology, Shanghai Changzheng Hospital, Second Military Medical University , Shanghai200003, China

                Co first authors

                Amir Arastehfar, Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands

                Farnaz Daneshnia, Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands

                Author information
                http://orcid.org/0000-0002-8782-2036
                Article
                1601061
                10.1080/20002297.2019.1601061
                6484487
                31044032
                167f335c-0985-46ef-9e99-d1ac8d2c78eb
                © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 21 December 2018
                : 30 January 2019
                : 22 March 2019
                Page count
                Figures: 1, Tables: 1, References: 61, Pages: 10
                Funding
                Funded by: H2020 Marie Skłodowska-Curie Actions 10.13039/100010665
                Award ID: 642065
                Funded by: Iran University of Medical Sciences 10.13039/100012021
                Award ID: 97023033725
                Funded by: National Natural Science Foundation of China 10.13039/501100001809
                Award ID: 31770161
                Funded by: National Natural Science Foundation of China 10.13039/501100001809
                Award ID: 31770161
                Funded by: National Department of Health (ZA)
                Award ID: 2018ZX10101003
                Funded by: Shanghai Science and Technology Committee 10.13039/501100001809
                Award ID: 14DZ2272900 and 14495800500
                Funded by: Shanghai Science and Technology Committee 10.13039/501100001809
                Award ID: 14DZ2272900 and 14495800500
                Funded by: National health department of China 10.13039/501100001809
                Award ID: 2018ZX10101003
                Funded by: European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement 10.13039/501100001809
                Award ID: 642095
                Funded by: Second Military Medical University 10.13039/501100007054
                Award ID: 2017JZ47
                Funded by: Second Military Medical University 10.13039/501100007054
                Award ID: 2017JZ47
                This project has received funding from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 642095, National Health Department of China [2018ZX10101003], National Natural Science Foundation of China [31770161], Second Military Medical University [2017JZ47], Shanghai Science and Technology Committee [14DZ2272900 and 14495800500], and the Iran University of Medical Sciences  (33725).
                Categories
                Original Article

                Microbiology & Virology
                oral candidiasis,hematological malignancies,nystatin,fluconazole,21-plex pcr,and maldi-tof ms

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