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      RNA-mediated control of cell shape modulates antibiotic resistance in Vibrio cholerae

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          Abstract

          Vibrio cholerae, the cause of cholera disease, exhibits a characteristic curved rod morphology, which promotes infectivity and motility in dense hydrogels. Periplasmic protein CrvA determines cell curvature in V. cholerae, yet the regulatory factors controlling CrvA are unknown. Here, we discover the VadR small RNA (sRNA) as a post-transcriptional inhibitor of the crvA mRNA. Mutation of vadR increases cell curvature, whereas overexpression has the inverse effect. We show that vadR transcription is activated by the VxrAB two-component system and triggered by cell-wall-targeting antibiotics. V. cholerae cells failing to repress crvA by VadR display decreased survival upon challenge with penicillin G indicating that cell shape maintenance by the sRNA is critical for antibiotic resistance. VadR also blocks the expression of various key biofilm genes and thereby inhibits biofilm formation in V. cholerae. Thus, VadR is an important regulator for synchronizing peptidoglycan integrity, cell shape, and biofilm formation in V. cholerae.

          Abstract

          Small regulatory RNAs (sRNAs) in Vibrio cholerae have been shown to modulate several biological processess including virulence, biofilm formation, quorum sensing, colony morphology and stress resistance. Here, the authors show that VadR sRNA acts as a posttranscriptional inhibitor of the crvA mRNA and that mutation of vadR increases cell curvature, whereas overexpression has the inverse effect.

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          Gene Ontology: tool for the unification of biology

          Genomic sequencing has made it clear that a large fraction of the genes specifying the core biological functions are shared by all eukaryotes. Knowledge of the biological role of such shared proteins in one organism can often be transferred to other organisms. The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing. To this end, three independent ontologies accessible on the World-Wide Web (http://www.geneontology.org) are being constructed: biological process, molecular function and cellular component.
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            Fiji: an open-source platform for biological-image analysis.

            Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
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              Regulatory RNAs in bacteria.

              Bacteria possess numerous and diverse means of gene regulation using RNA molecules, including mRNA leaders that affect expression in cis, small RNAs that bind to proteins or base pair with target RNAs, and CRISPR RNAs that inhibit the uptake of foreign DNA. Although examples of RNA regulators have been known for decades in bacteria, we are only now coming to a full appreciation of their importance and prevalence. Here, we review the known mechanisms and roles of regulatory RNAs, highlight emerging themes, and discuss remaining questions.
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                Author and article information

                Contributors
                kai.papenfort@uni-jena.de
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                27 November 2020
                27 November 2020
                2020
                : 11
                : 6067
                Affiliations
                [1 ]GRID grid.9613.d, ISNI 0000 0001 1939 2794, Institute of Microbiology, , Friedrich Schiller University, ; 07745 Jena, Germany
                [2 ]GRID grid.5252.0, ISNI 0000 0004 1936 973X, Faculty of Biology, , Ludwig-Maximilians-University of Munich, ; 82152 Martinsried, Germany
                [3 ]GRID grid.419554.8, ISNI 0000 0004 0491 8361, Max Planck Institute for Terrestrial Microbiology, ; 35043 Marburg, Germany
                [4 ]GRID grid.9764.c, ISNI 0000 0001 2153 9986, Institute for General Microbiology, , Christian-Albrechts-University, ; Kiel, Germany
                [5 ]GRID grid.9613.d, ISNI 0000 0001 1939 2794, Microverse Cluster, , Friedrich Schiller University Jena, ; 07743 Jena, Germany
                [6 ]GRID grid.10253.35, ISNI 0000 0004 1936 9756, Department of Physics, , Philipps-Universität Marburg, ; 35032 Marburg, Germany
                Author information
                http://orcid.org/0000-0003-2835-775X
                http://orcid.org/0000-0002-0254-7400
                http://orcid.org/0000-0002-6213-4202
                http://orcid.org/0000-0002-7340-2444
                http://orcid.org/0000-0002-5560-9804
                Article
                19890
                10.1038/s41467-020-19890-8
                7695739
                33247102
                2d24c4d7-16a3-4c0d-b4f0-18fc0524b2be
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 18 March 2020
                : 6 November 2020
                Funding
                Funded by: FundRef https://doi.org/10.13039/100008662, Joachim Herz Stiftung (Joachim Herz Foundation);
                Funded by: FundRef https://doi.org/10.13039/501100004189, Max-Planck-Gesellschaft (Max Planck Society);
                Funded by: FundRef https://doi.org/10.13039/501100001659, Deutsche Forschungsgemeinschaft (German Research Foundation);
                Award ID: Trr174
                Award ID: TRR174
                Award ID: EXC2051
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100010663, EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council);
                Award ID: StG-716734
                Award ID: StG-758212
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100000854, Human Frontier Science Program (HFSP);
                Award ID: CDA00024/2016-C
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100007204, Vallee Foundation (Bert L. & N. Kuggie Vallee Foundation);
                Categories
                Article
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                © The Author(s) 2020

                Uncategorized
                bacterial genetics,biofilms
                Uncategorized
                bacterial genetics, biofilms

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