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      Clinical, Immunological, and Molecular Features of Severe Combined Immune Deficiency: A Multi-Institutional Experience From India

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      1 , 1 , 1 , 1 , 1 , 1 , 1 , 1 , 1 , 1 , 1 , 2 , 3 , 3 , 1 , 4 , 4 , 4 , 5 , 6 , 6 , 6 , 6 , 7 , 8 , 8 , 9 , 10 , 10 , 11 , 11 , 12 , 12 , 13 , 13 , 14 , 15 , 16 , 16 , 17 , 18 , 19 , 20 , 20 , 20 , 21 , 22 , 22 , 23 , 20 , 24 , 22 , 1
      Frontiers in Immunology
      Frontiers Media S.A.
      severe combined immune deficiency, India, hematopoietic stem cell transplantation, newborn screening, BCG

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          Abstract

          Background

          Severe Combined Immune Deficiency (SCID) is an inherited defect in lymphocyte development and function that results in life-threatening opportunistic infections in early infancy. Data on SCID from developing countries are scarce.

          Objective

          To describe clinical and laboratory features of SCID diagnosed at immunology centers across India.

          Methods

          A detailed case proforma in an Excel format was prepared by one of the authors (PV) and was sent to centers in India that care for patients with primary immunodeficiency diseases. We collated clinical, laboratory, and molecular details of patients with clinical profile suggestive of SCID and their outcomes. Twelve (12) centers provided necessary details which were then compiled and analyzed. Diagnosis of SCID/combined immune deficiency (CID) was based on 2018 European Society for Immunodeficiencies working definition for SCID.

          Results

          We obtained data on 277 children; 254 were categorized as SCID and 23 as CID. Male-female ratio was 196:81. Median (inter-quartile range) age of onset of clinical symptoms and diagnosis was 2.5 months (1, 5) and 5 months (3.5, 8), respectively. Molecular diagnosis was obtained in 162 patients - IL2RG (36), RAG1 (26), ADA (19), RAG2 (17), JAK3 (15), DCLRE1C (13), IL7RA (9), PNP (3), RFXAP (3), CIITA (2), RFXANK (2), NHEJ1 (2), CD3E (2), CD3D (2), RFX5 (2), ZAP70 (2), STK4 (1), CORO1A (1), STIM1 (1), PRKDC (1), AK2 (1), DOCK2 (1), and SP100 (1). Only 23 children (8.3%) received hematopoietic stem cell transplantation (HSCT). Of these, 11 are doing well post-HSCT. Mortality was recorded in 210 children (75.8%).

          Conclusion

          We document an exponential rise in number of cases diagnosed to have SCID over the last 10 years, probably as a result of increasing awareness and improvement in diagnostic facilities at various centers in India. We suspect that these numbers are just the tip of the iceberg. Majority of patients with SCID in India are probably not being recognized and diagnosed at present. Newborn screening for SCID is the need of the hour. Easy access to pediatric HSCT services would ensure that these patients are offered HSCT at an early age.

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          Most cited references64

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          Human Inborn Errors of Immunity: 2019 Update on the Classification from the International Union of Immunological Societies Expert Committee

          We report the updated classification of Inborn Errors of Immunity/Primary Immunodeficiencies, compiled by the International Union of Immunological Societies Expert Committee. This report documents the key clinical and laboratory features of 430 inborn errors of immunity, including 64 gene defects that have either been discovered in the past 2 years since the previous update (published January 2018) or were characterized earlier but have since been confirmed or expanded upon in subsequent studies. The application of next-generation sequencing continues to expedite the rapid identification of novel gene defects, rare or common; broaden the immunological and clinical phenotypes of conditions arising from known gene defects and even known variants; and implement gene-specific therapies. These advances are contributing to greater understanding of the molecular, cellular, and immunological mechanisms of disease, thereby enhancing immunological knowledge while improving the management of patients and their families. This report serves as a valuable resource for the molecular diagnosis of individuals with heritable immunological disorders and also for the scientific dissection of cellular and molecular mechanisms underlying inborn errors of immunity and related human diseases.
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            Interleukin-2 receptor gamma chain mutation results in X-linked severe combined immunodeficiency in humans.

            The interleukin-2 (IL-2) receptor gamma chain (IL-2R gamma) is a component of high and intermediate affinity IL-2 receptors that is required to achieve full ligand binding affinity and internalization. We have localized the IL-2R gamma gene to human chromosome Xq13. Genetic linkage analysis indicates that the IL-2R gamma gene and the locus for X-linked severe combined immunodeficiency (XSCID) appear to be at the same position. Moreover, we demonstrate that each of three unrelated patients with XSCID has a different mutation in his IL-2R gamma gene resulting in a different premature stop codon and predicted C-terminal truncation. These data establish that XSCID is associated with mutations of the IL-2R gamma gene product. Since XSCID is characterized by absent or markedly reduced numbers of T cells, our findings imply that IL-2R gamma plays a vital role in thymic maturation of T cells. These results also have important implications for prenatal and postnatal diagnosis, carrier female detection, and gene therapy for XSCID.
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              Newborn screening for severe combined immunodeficiency in 11 screening programs in the United States.

              Newborn screening for severe combined immunodeficiency (SCID) using assays to detect T-cell receptor excision circles (TRECs) began in Wisconsin in 2008, and SCID was added to the national recommended uniform panel for newborn screened disorders in 2010. Currently 23 states, the District of Columbia, and the Navajo Nation conduct population-wide newborn screening for SCID. The incidence of SCID is estimated at 1 in 100,000 births. To present data from a spectrum of SCID newborn screening programs, establish population-based incidence for SCID and other conditions with T-cell lymphopenia, and document early institution of effective treatments. Epidemiological and retrospective observational study. Representatives in states conducting SCID newborn screening were invited to submit their SCID screening algorithms, test performance data, and deidentified clinical and laboratory information regarding infants screened and cases with nonnormal results. Infants born from the start of each participating program from January 2008 through the most recent evaluable date prior to July 2013 were included. Representatives from 10 states plus the Navajo Area Indian Health Service contributed data from 3,030,083 newborns screened with a TREC test. Infants with SCID and other diagnoses of T-cell lymphopenia were classified. Incidence and, where possible, etiologies were determined. Interventions and survival were tracked. Screening detected 52 cases of typical SCID, leaky SCID, and Omenn syndrome, affecting 1 in 58,000 infants (95% CI, 1/46,000-1/80,000). Survival of SCID-affected infants through their diagnosis and immune reconstitution was 87% (45/52), 92% (45/49) for infants who received transplantation, enzyme replacement, and/or gene therapy. Additional interventions for SCID and non-SCID T-cell lymphopenia included immunoglobulin infusions, preventive antibiotics, and avoidance of live vaccines. Variations in definitions and follow-up practices influenced the rates of detection of non-SCID T-cell lymphopenia. Newborn screening in 11 programs in the United States identified SCID in 1 in 58,000 infants, with high survival. The usefulness of detection of non-SCID T-cell lymphopenias by the same screening remains to be determined.
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                Author and article information

                Contributors
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                Journal
                Front Immunol
                Front Immunol
                Front. Immunol.
                Frontiers in Immunology
                Frontiers Media S.A.
                1664-3224
                08 February 2021
                2020
                : 11
                : 619146
                Affiliations
                [1] 1 Allergy Immunology Unit, Department of Pediatrics, Advanced Pediatrics Centre, Post Graduate Institute of Medical Education and Research , Chandigarh, India
                [2] 2 Bone Marrow Transplantation Unit, Department of Internal Medicine, Post Graduate Institute of Medical Education and Research , Chandigarh, India
                [3] 3 Department of Immunopathology, Post Graduate Institute of Medical Education and Research , Chandigarh, India
                [4] 4 Department of Immunology, Bai Jerbai Wadia Hospital for Children , Mumbai, India
                [5] 5 Bone Marrow Transplantation Unit, Bai Jerbai Wadia Hospital for Children , Mumbai, India
                [6] 6 ICMR-National Institute of Immunohematology , Mumbai, India
                [7] 7 Pediatric Immunology and Rheumatology, Aster CMI hospital , Bengaluru, India
                [8] 8 Pediatric Hemat-oncology and BMT Unit, Aster CMI Hospital , Bengaluru, India
                [9] 9 Anand Neuberg Diagnostic and Research Centre , Bengaluru, India
                [10] 10 Kanchi Kamakoti Child Trust Hospitals for Children , Chennai, India
                [11] 11 Institute of Child Health, Madras Medical College , Chennai, India
                [12] 12 Sanjay Gandhi Postgraduate Institute of Medical Sciences , Lucknow, India
                [13] 13 Christian Medical College , Vellore, India
                [14] 14 Zydus Hospitals , Ahmedabad, India
                [15] 15 Department of Pediatrics, Kasturba Medical College , Mangalore, India
                [16] 16 Apollo Children’s Hospital , Chennai, India
                [17] 17 Aditya Birla Memorial Hospital , Pune, India
                [18] 18 Department of Histopathology, Post Graduate Institute of Medical Education and Research , Chandigarh, India
                [19] 19 Department of Hematology, Post Graduate Institute of Medical Education and Research , Chandigarh, India
                [20] 20 Department of Pediatrics, National Defense Medical College , Saitama, Japan
                [21] 21 Department of Community Pediatrics, Perinatal and Maternal Medicine, Tokyo Medical and Dental University , Tokyo, Japan
                [22] 22 Department of Paediatrics and Adolescent Medicine, The University of Hong Kong , Hong Kong, Hong Kong
                [23] 23 Kazusa DNA Research Institute , Chiba, Japan
                [24] 24 Duke University Medical Center , Durham, NC, United States
                Author notes

                Edited by: Sudhir Gupta, University of California, Irvine, United States

                Reviewed by: Javier Chinen, Baylor College of Medicine, United States; Raz Somech, Sheba Medical Center, Israel

                *Correspondence: Amit Rawat, rawatamit@ 123456yahoo.com

                †These authors share first authorship

                This article was submitted to Primary Immunodeficiencies, a section of the journal Frontiers in Immunology

                Article
                10.3389/fimmu.2020.619146
                7897653
                33628209
                3143fdef-79a9-4c61-9896-038434fd6487
                Copyright © 2021 Vignesh, Rawat, Kumrah, Singh, Gummadi, Sharma, Kaur, Nameirakpam, Jindal, Suri, Gupta, Khadwal, Saikia, Minz, Sharma, Desai, Taur, Gowri, Pandrowala, Dalvi, Jodhawat, Kambli, Madkaikar, Bhattad, Ramprakash, CP, Jayaram, Sivasankaran, Munirathnam, Balaji, Rajendran, Aggarwal, Singh, Na, George, Mehta, Lashkari, Uppuluri, Raj, Bartakke, Gupta, Sreedharanunni, Ogura, Kato, Imai, Chan, Leung, Ohara, Nonoyama, Hershfield, Lau and Singh

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 19 October 2020
                : 17 December 2020
                Page count
                Figures: 6, Tables: 6, Equations: 0, References: 69, Pages: 41, Words: 20133
                Funding
                Funded by: Indian Council of Medical Research 10.13039/501100001411
                Categories
                Immunology
                Original Research

                Immunology
                severe combined immune deficiency,india,hematopoietic stem cell transplantation,newborn screening,bcg

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