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      Energy metabolism and mitochondrial defects in X-linked Charcot-Marie-Tooth (CMTX6) iPSC-derived motor neurons with the p.R158H PDK3 mutation

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          Abstract

          Charcot-Marie-Tooth (CMT) is a group of inherited diseases clinically and genetically heterogenous, characterised by length dependent degeneration of axons of the peripheral nervous system. A missense mutation (p.R158H) in the pyruvate dehydrogenase kinase 3 gene ( PDK3) has been identified as the genetic cause for an X-linked form of CMT (CMTX6) in two unrelated families. PDK3 is one of four PDK isoenzymes that regulate the activity of the pyruvate dehydrogenase complex (PDC). The balance between kinases (PDKs) and phosphatases (PDPs) determines the extend of oxidative decarboxylation of pyruvate to generate acetyl CoA, critically linking glycolysis and the energy producing Krebs cycle. We had shown the p.R158H mutation causes hyperactivity of PDK3 and CMTX6 fibroblasts show hyperphosphorylation of PDC, leading to reduced PDC activity and ATP production. In this manuscript we have generated induced pluripotent stem cells (iPSCs) by re-programming CMTX6 fibroblasts (iPSC CMTX6). We also have engineered an isogenic control (iPSC isogenic) and demonstrated that genetic correction of the p.R158H mutation reverses the CMTX6 phenotype. Patient-derived motor neurons (MN CMTX6) show increased phosphorylation of the PDC, energy metabolism defects and mitochondrial abnormalities, including reduced velocity of trafficking mitochondria in the affected axons. Treatment of the MN CMTX6 with a PDK inhibitor reverses PDC hyperphosphorylation and the associated functional deficits founds in the patient motor neurons, demonstrating that the MN CMTX6 and MN isogenic motor neurons provide an excellent neuronal system for compound screening approaches to identify drugs for the treatment of CMTX6.

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          Human induced pluripotent stem cells free of vector and transgene sequences.

          Reprogramming differentiated human cells to induced pluripotent stem (iPS) cells has applications in basic biology, drug development, and transplantation. Human iPS cell derivation previously required vectors that integrate into the genome, which can create mutations and limit the utility of the cells in both research and clinical applications. We describe the derivation of human iPS cells with the use of nonintegrating episomal vectors. After removal of the episome, iPS cells completely free of vector and transgene sequences are derived that are similar to human embryonic stem (ES) cells in proliferative and developmental potential. These results demonstrate that reprogramming human somatic cells does not require genomic integration or the continued presence of exogenous reprogramming factors and removes one obstacle to the clinical application of human iPS cells.
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            Genetics of Charcot-Marie-Tooth (CMT) Disease within the Frame of the Human Genome Project Success

            Charcot-Marie-Tooth (CMT) neuropathies comprise a group of monogenic disorders affecting the peripheral nervous system. CMT is characterized by a clinically and genetically heterogeneous group of neuropathies, involving all types of Mendelian inheritance patterns. Over 1,000 different mutations have been discovered in 80 disease-associated genes. Genetic research of CMT has pioneered the discovery of genomic disorders and aided in understanding the effects of copy number variation and the mechanisms of genomic rearrangements. CMT genetic study also unraveled common pathomechanisms for peripheral nerve degeneration, elucidated gene networks, and initiated the development of therapeutic approaches. The reference genome, which became available thanks to the Human Genome Project, and the development of next generation sequencing tools, considerably accelerated gene and mutation discoveries. In fact, the first clinical whole genome sequence was reported in a patient with CMT. Here we review the history of CMT gene discoveries, starting with technologies from the early days in human genetics through the high-throughput application of modern DNA analyses. We highlight the most relevant examples of CMT genes and mutation mechanisms, some of which provide promising treatment strategies. Finally, we propose future initiatives to accelerate diagnosis of CMT patients through new ways of sharing large datasets and genetic variants, and at ever diminishing costs.
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              An analysis of critical factors for quantitative immunoblotting.

              Immunoblotting (also known as Western blotting) combined with digital image analysis can be a reliable method for analyzing the abundance of proteins and protein modifications, but not every immunoblot-analysis combination produces an accurate result. I illustrate how sample preparation, protocol implementation, detection scheme, and normalization approach profoundly affect the quantitative performance of immunoblotting. This study implemented diagnostic experiments that assess an immunoblot-analysis workflow for accuracy and precision. The results showed that ignoring such diagnostics can lead to pseudoquantitative immunoblot data that markedly overestimate or underestimate true differences in protein abundance.
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                Author and article information

                Contributors
                gonzalo.perez-siles@sydney.edu.au
                marina.kennerson@sydney.edu.au
                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group UK (London )
                2045-2322
                5 June 2020
                5 June 2020
                2020
                : 10
                : 9262
                Affiliations
                [1 ]Northcott Neuroscience Laboratory, ANZAC Research Institute, Sydney, Australia
                [2 ]ISNI 0000 0004 1936 834X, GRID grid.1013.3, Sydney Medical School, , University of Sydney, ; Sydney, Australia
                [3 ]ISNI 0000 0004 0392 3935, GRID grid.414685.a, Molecular Medicine Laboratory, , Concord Repatriation General Hospital, ; Sydney, Australia
                [4 ]ISNI 0000 0004 1936 7611, GRID grid.117476.2, School of Life Sciences, , University of Technology Sydney, ; Sydney, NSW Australia
                [5 ]ISNI 0000 0004 0372 2033, GRID grid.258799.8, Institute for Integrated Cell-Material Sciences and Institute for Chemical Research, , Kyoto University, ; Kyoto, Japan
                [6 ]ISNI 0000 0004 0614 0346, GRID grid.416107.5, Department of Neurology, , Royal Children’s Hospital, Flemington Road, ; Parkville, VIC Australia
                [7 ]ISNI 0000 0000 9442 535X, GRID grid.1058.c, Neuroscience Research, , Murdoch Children’s Research Institute, ; Melbourne, VIC Australia
                [8 ]ISNI 0000 0001 2179 088X, GRID grid.1008.9, Department of Paediatrics, , The University of Melbourne, ; Melbourne, VIC Australia
                [9 ]Department of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea
                Article
                66266
                10.1038/s41598-020-66266-5
                7275085
                32504000
                31e261c0-cf77-445d-a6cb-27694ec1ff65
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 12 December 2019
                : 18 May 2020
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                © The Author(s) 2020

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                cell biology,molecular biology,neuroscience,stem cells,diseases,medical research,pathogenesis

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