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      Mitochondrial complex I and cell death: a semi-automatic shotgun model

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          Abstract

          Mitochondrial dysfunction often leads to cell death and disease. We can now draw correlations between the dysfunction of one of the most important mitochondrial enzymes, NADH:ubiquinone reductase or complex I, and its structural organization thanks to the recent advances in the X-ray structure of its bacterial homologs. The new structural information on bacterial complex I provide essential clues to finally understand how complex I may work. However, the same information remains difficult to interpret for many scientists working on mitochondrial complex I from different angles, especially in the field of cell death. Here, we present a novel way of interpreting the bacterial structural information in accessible terms. On the basis of the analogy to semi-automatic shotguns, we propose a novel functional model that incorporates recent structural information with previous evidence derived from studies on mitochondrial diseases, as well as functional bioenergetics.

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          Most cited references49

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          Energy converting NADH:quinone oxidoreductase (complex I).

          NADH:quinone oxidoreductase (complex I) pumps protons across the inner membrane of mitochondria or the plasma membrane of many bacteria. Human complex I is involved in numerous pathological conditions and degenerative processes. With 14 central and up to 32 accessory subunits, complex I is among the largest membrane-bound protein assemblies. The peripheral arm of the L-shaped molecule contains flavine mononucleotide and eight or nine iron-sulfur clusters as redox prosthetic groups. Seven of the iron-sulfur clusters form a linear electron transfer chain between flavine and quinone. In most organisms, the seven most hydrophobic subunits forming the core of the membrane arm are encoded by the mitochondrial genome. Most central subunits have evolved from subunits of different hydrogenases and bacterial Na+/H+ antiporters. This evolutionary origin is reflected in three functional modules of complex I. The coupling mechanism of complex I most likely involves semiquinone intermediates that drive proton pumping through redox-linked conformational changes.
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            An enhanced MITOMAP with a global mtDNA mutational phylogeny

            The MITOMAP () data system for the human mitochondrial genome has been greatly enhanced by the addition of a navigable mutational mitochondrial DNA (mtDNA) phylogenetic tree of ∼3000 mtDNA coding region sequences plus expanded pathogenic mutation tables and a nuclear-mtDNA pseudogene (NUMT) data base. The phylogeny reconstructs the entire mutational history of the human mtDNA, thus defining the mtDNA haplogroups and differentiating ancient from recent mtDNA mutations. Pathogenic mutations are classified by both genotype and phenotype, and the NUMT sequences permits detection of spurious inclusion of pseudogene variants during mutation analysis. These additions position MITOMAP for the implementation of our automated mtDNA sequence analysis system, Mitomaster.
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              The architecture of respiratory complex I.

              Complex I is the first enzyme of the respiratory chain and has a central role in cellular energy production, coupling electron transfer between NADH and quinone to proton translocation by an unknown mechanism. Dysfunction of complex I has been implicated in many human neurodegenerative diseases. We have determined the structure of its hydrophilic domain previously. Here, we report the alpha-helical structure of the membrane domain of complex I from Escherichia coli at 3.9 A resolution. The antiporter-like subunits NuoL/M/N each contain 14 conserved transmembrane (TM) helices. Two of them are discontinuous, as in some transporters. Unexpectedly, subunit NuoL also contains a 110-A long amphipathic alpha-helix, spanning almost the entire length of the domain. Furthermore, we have determined the structure of the entire complex I from Thermus thermophilus at 4.5 A resolution. The L-shaped assembly consists of the alpha-helical model for the membrane domain, with 63 TM helices, and the known structure of the hydrophilic domain. The architecture of the complex provides strong clues about the coupling mechanism: the conformational changes at the interface of the two main domains may drive the long amphipathic alpha-helix of NuoL in a piston-like motion, tilting nearby discontinuous TM helices, resulting in proton translocation.
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                Author and article information

                Journal
                Cell Death Dis
                Cell Death & Disease
                Nature Publishing Group
                2041-4889
                October 2011
                27 October 2011
                1 October 2011
                : 2
                : 10
                : e222
                Affiliations
                [1 ]simpleInstituto de Fisiología Celular, Universidad Nacional Autónoma de México , México D.F., México
                [2 ]simpleDepartment of Biology, Bologna University , Bologna, Italy
                [3 ]simpleDepartment of Neurological Sciences, Bologna University , Bologna, Italy
                [4 ]simpleDepartment of Life Sciences, The University of Manchester , Manchester, UK
                Author notes
                [* ]simpleDepartment of Life Sciences , Michael Smith Building, The University of Manchester, Oxford Road M13 9PT, Manchester, UK. Tel: +44 161 275 5447; Fax: +44 161 275 5762; E-mail: mauro.esposti@ 123456manchester.ac.uk
                Article
                cddis2011107
                10.1038/cddis.2011.107
                3219089
                22030538
                35e8a7f2-1aa3-4041-a717-8c32ff717dbe
                Copyright © 2011 Macmillan Publishers Limited

                This work is licensed under the Creative Commons Attribution-NonCommercial-No Derivative Works 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/

                History
                : 11 July 2011
                : 08 August 2011
                : 08 September 2011
                Categories
                Review

                Cell biology
                complex i,mitochondria,mitochondrial disease
                Cell biology
                complex i, mitochondria, mitochondrial disease

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