4
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: not found

      Quantitative Structure–Activity Relationship Models for Predicting Inflammatory Potential of Metal Oxide Nanoparticles

      research-article

      Read this article at

      ScienceOpenPublisherPMC
      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Background:

          Although substantial concerns about the inflammatory effects of engineered nanomaterial (ENM) have been raised, experimentally assessing toxicity of various ENMs is challenging and time-consuming. Alternatively, quantitative structure–activity relationship (QSAR) models have been employed to assess nanosafety. However, no previous attempt has been made to predict the inflammatory potential of ENMs.

          Objectives:

          By employing metal oxide nanoparticles (MeONPs) as a model ENM, we aimed to develop QSAR models for prediction of the inflammatory potential by their physicochemical properties.

          Methods:

          We built a comprehensive data set of 30 MeONPs to screen a proinflammatory cytokine interleukin (IL)-1 beta ( IL- 1 β ) release in THP-1 cell line. The in vitro hazard ranking was validated in mouse lungs by oropharyngeal instillation of six randomly selected MeONPs. We established QSAR models for prediction of MeONP-induced inflammatory potential via machine learning. The models were further validated against seven new MeONPs. Density functional theory (DFT) computations were exploited to decipher the key mechanisms driving inflammatory responses of MeONPs.

          Results:

          Seventeen out of 30 MeONPs induced excess IL- 1 β production in THP-1 cells. In vivo disease outcomes were highly relevant to the in vitro data. QSAR models were developed for inflammatory potential, with predictive accuracy (ACC) exceeding 90%. The models were further validated experimentally against seven independent MeONPs ( ACC = 86 % ). DFT computations and experimental results further revealed the underlying mechanisms: MeONPs with metal electronegativity lower than 1.55 and positive ζ -potential were more likely to cause lysosomal damage and inflammation.

          Conclusions:

          IL- 1 β released in THP-1 cells can be an index to rank the inflammatory potential of MeONPs. QSAR models based on IL- 1 β were able to predict the inflammatory potential of MeONPs. Our approach overcame the challenge of time- and labor-consuming biological experiments and allowed for computational assessment of MeONP inflammatory potential by characterization of their physicochemical properties. https://doi.org/10.1289/EHP6508

          Related collections

          Most cited references56

          • Record: found
          • Abstract: not found
          • Article: not found

          Generalized Gradient Approximation Made Simple

            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Comparison of the predicted and observed secondary structure of T4 phage lysozyme.

            Predictions of the secondary structure of T4 phage lysozyme, made by a number of investigators on the basis of the amino acid sequence, are compared with the structure of the protein determined experimentally by X-ray crystallography. Within the amino terminal half of the molecule the locations of helices predicted by a number of methods agree moderately well with the observed structure, however within the carboxyl half of the molecule the overall agreement is poor. For eleven different helix predictions, the coefficients giving the correlation between prediction and observation range from 0.14 to 0.42. The accuracy of the predictions for both beta-sheet regions and for turns are generally lower than for the helices, and in a number of instances the agreement between prediction and observation is no better than would be expected for a random selection of residues. The structural predictions for T4 phage lysozyme are much less successful than was the case for adenylate kinase (Schulz et al. (1974) Nature 250, 140-142). No one method of prediction is clearly superior to all others, and although empirical predictions based on larger numbers of known protein structure tend to be more accurate than those based on a limited sample, the improvement in accuracy is not dramatic, suggesting that the accuracy of current empirical predictive methods will not be substantially increased simply by the inclusion of more data from additional protein structure determinations.
              Bookmark
              • Record: found
              • Abstract: not found
              • Article: not found

              OPLS discriminant analysis: combining the strengths of PLS-DA and SIMCA classification

                Bookmark

                Author and article information

                Journal
                Environ Health Perspect
                Environ. Health Perspect
                EHP
                Environmental Health Perspectives
                Environmental Health Perspectives
                0091-6765
                1552-9924
                12 June 2020
                June 2020
                : 128
                : 6
                : 067010
                Affiliations
                [ 1 ]Key Laboratory of Industrial Ecology and Environmental Engineering, School of Environmental Science and Technology, Dalian University of Technology , Dalian, China
                [ 2 ]State Key Laboratory of Radiation Medicine and Protection, Collaborative Innovation Center of Radiological Medicine of Jiangsu Higher Education Institutions, School for Radiological and Interdisciplinary Sciences (RAD-X), Soochow University , Suzhou, Jiangsu, China
                [ 3 ]Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, U.S. Food and Drug Administration , Jefferson, Arkansas, USA
                [ 4 ]Immuneering Corporation , One Broadway, 14th Floor, Cambridge, Massachusetts, USA
                Author notes
                Address correspondence to X. Li, Dalian University of Technology, Linggong Rd. 2, Dalian 116024, PR China. Email: lixuehua@ 123456dlut.edu.cn or R. Li, 99 Ren’ai Rd., 401 Building, Suzhou 215123, PR China. Email: liruibin@ 123456suda.edu.cn
                Article
                EHP6508
                10.1289/EHP6508
                7292395
                32692251
                3756908a-78ec-447c-be20-06e7e6f32d84

                EHP is an open-access journal published with support from the National Institute of Environmental Health Sciences, National Institutes of Health. All content is public domain unless otherwise noted.

                History
                : 07 November 2019
                : 14 May 2020
                : 18 May 2020
                Categories
                Research

                Public health
                Public health

                Comments

                Comment on this article