Integrative Redescription of the Minibiotus intermedius (Plate, 1888)—The Type Species of the Genus Minibiotus R.O. Schuster, 1980

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Abstract

In the present study, we used the integrative taxonomy approach to redescribe Minibiotus intermedius based on the newly found topotypic population in Marburg (Germany). As the original type material is not available, we designate a neotype to stabilize the taxonomy of the genus Minibiotus. Obtained mitochondrial COI barcode sequence and nuclear markers, i.e., 18S rRNA and 28S rRNA of M. intermedius from the neotype locality, were unique and distinct from those deposited in GenBank. In the first redescription of M. intermedius, only four specimens and no eggs from the neotype locality were analyzed. Moreover, genetic analyses were not conducted and barcodes were not available. Therefore, the present study, by establishing the neotype and providing integrative data on the neotype population, helps to better define the Minibiotus taxonomy and prevents further misunderstandings in the future.

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MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Sudhir Kumar, Glen Stecher, Michael KaWah Li … (2018)

The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.

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Basic local alignment search tool.

Stephen F Altschul, Warren Gish, Webb Miller … (1990)

A new approach to rapid sequence comparison, basic local alignment search tool (BLAST), directly approximates alignments that optimize a measure of local similarity, the maximal segment pair (MSP) score. Recent mathematical results on the stochastic properties of MSP scores allow an analysis of the performance of this method as well as the statistical significance of alignments it generates. The basic algorithm is simple and robust; it can be implemented in a number of ways and applied in a variety of contexts including straightforward DNA and protein sequence database searches, motif searches, gene identification searches, and in the analysis of multiple regions of similarity in long DNA sequences. In addition to its flexibility and tractability to mathematical analysis, BLAST is an order of magnitude faster than existing sequence comparison tools of comparable sensitivity.