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      Why should we study plant sex chromosomes?

      review-article
      ,
      The Plant Cell
      Oxford University Press

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          Abstract

          Understanding plant sex chromosomes involves studying interactions between developmental and physiological genetics, genome evolution, and evolutionary ecology. We focus on areas of overlap between these. Ideas about how species with separate sexes (dioecious species, in plant terminology) can evolve are even more relevant to plants than to most animal taxa because dioecy has evolved many times from ancestral functionally hermaphroditic populations, often recently. One aim of studying plant sex chromosomes is to discover how separate males and females evolved from ancestors with no such genetic sex-determining polymorphism, and the diversity in the genetic control of maleness vs femaleness. Different systems share some interesting features, and their differences help to understand why completely sex-linked regions may evolve. In some dioecious plants, the sex-determining genome regions are physically small. In others, regions without crossing over have evolved sometimes extensive regions with properties very similar to those of the familiar animal sex chromosomes. The differences also affect the evolutionary changes possible when the environment (or pollination environment, for angiosperms) changes, as dioecy is an ecologically risky strategy for sessile organisms. Dioecious plants have repeatedly reverted to cosexuality, and hermaphroditic strains of fruit crops such as papaya and grapes are desired by plant breeders. Sex-linked regions are predicted to become enriched in genes with sex differences in expression, especially when higher expression benefits one sex function but harms the other. Such trade-offs may be important for understanding other plant developmental and physiological processes and have direct applications in plant breeding.

          Abstract

          Plant sex chromosomes can add to understanding of sex chromosomes generally, including regular absence of recombination near the sex-determining loci, and repeated expansion of sex-linked regions.

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          Most cited references103

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          Initial sequencing and analysis of the human genome.

          The human genome holds an extraordinary trove of information about human development, physiology, medicine and evolution. Here we report the results of an international collaboration to produce and make freely available a draft sequence of the human genome. We also present an initial analysis of the data, describing some of the insights that can be gleaned from the sequence.
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            The complete sequence of a human genome*

            Since its initial release in 2000, the human reference genome has covered only the euchromatic fraction of the genome, leaving important heterochromatic regions unfinished. Addressing the remaining 8% of the genome, the Telomere-to-Telomere (T2T) Consortium presents a complete 3.055 billion base pair (bp) sequence of a human genome, T2T-CHM13, that includes gapless assemblies for all chromosomes except Y, corrects errors in the prior references, and introduces nearly 200 million bp of sequence containing 1,956 gene predictions, 99 of which are predicted to be protein coding. The completed regions include all centromeric satellite arrays, recent segmental duplications, and the short arms of all five acrocentric chromosomes, unlocking these complex regions of the genome to variational and functional studies. Twenty years after the initial drafts, a truly complete sequence of a human genome reveals what has been missing.
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              The evolutionary dynamics of repetitive DNA in eukaryotes.

              Repetitive DNA sequences form a large portion of the genomes of eukaryotes. The 'selfish DNA' hypothesis proposes that they are maintained by their ability to replicate within the genome. The behaviour of repetitive sequences can result in mutations that cause genetic diseases, and confer significant fitness losses on the organism. Features of the organization of repetitive sequences in eukaryotic genomes, and their distribution in natural populations, reflect the evolutionary forces acting on selfish DNA.
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                Author and article information

                Contributors
                Journal
                Plant Cell
                Plant Cell
                plcell
                The Plant Cell
                Oxford University Press (US )
                1040-4651
                1532-298X
                May 2024
                02 January 2024
                02 January 2024
                : 36
                : 5
                : 1242-1256
                Affiliations
                Institute of Ecology and Evolution, University of Edinburgh , Edinburgh EH9 3FL, UK
                HudsonAlpha Institute for Biotechnology , Huntsville, AL 35806, USA
                Author notes
                Author for correspondence: Deborah.Charlesworth@ 123456ed.ac.uk

                Conflict of interest statement. None declared.

                Author information
                https://orcid.org/0000-0002-3939-9122
                https://orcid.org/0000-0002-2035-0871
                Article
                koad278
                10.1093/plcell/koad278
                11062472
                38163640
                390b53c2-2e33-4160-9a0f-c3365207d691
                © The Author(s) 2024. Published by Oxford University Press on behalf of American Society of Plant Biologists.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 02 August 2023
                : 10 October 2023
                : 02 January 2024
                Page count
                Pages: 15
                Categories
                Review
                AcademicSubjects/SCI01270
                AcademicSubjects/SCI01280
                AcademicSubjects/SCI02286
                AcademicSubjects/SCI02287
                AcademicSubjects/SCI02288

                Plant science & Botany
                Plant science & Botany

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