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      Expansion of the fatty acyl reductase gene family shaped pheromone communication in Hymenoptera

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          Abstract

          Fatty acyl reductases (FARs) are involved in the biosynthesis of fatty alcohols that serve a range of biological roles. Insects typically harbor numerous FAR gene family members. While some FARs are involved in pheromone biosynthesis, the biological significance of the large number of FARs in insect genomes remains unclear.

          Using bumble bee (Bombini) FAR expression analysis and functional characterization, hymenopteran FAR gene tree reconstruction, and inspection of transposable elements (TEs) in the genomic environment of FARs, we uncovered a massive expansion of the FAR gene family in Hymenoptera, presumably facilitated by TEs. The expansion occurred in the common ancestor of bumble bees and stingless bees (Meliponini). We found that bumble bee FARs from the expanded FAR-A ortholog group contribute to the species-specific pheromone composition. Our results indicate that expansion and functional diversification of the FAR gene family played a key role in the evolution of pheromone communication in Hymenoptera.

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          Many insects release chemical signals, known as sex pheromones, to attract mates over long distances. The pheromones of male bumble bees, for example, contain chemicals called fatty alcohols. Each species of bumble bee releases a different blend of these chemicals, and even species that are closely related may produce very different ‘cocktails’ of pheromones.

          The enzymes that make fatty alcohols are called fatty acyl reductases (or FARs for short). Any change to a gene that encodes one of these enzymes could change the final mix of pheromones produced. This in turn could have far-reaching effects for the insect, and in particular its mating success. Over time, these changes could even result in new species. Yet no one has previously looked into how the genes for FAR enzymes have evolved in bumble bees, or how these genes might have shaped the evolution of this important group of insects.

          Tupec, Buček et al. set out to learn what genetic changes led the males of three common species of bumble bees to make dramatically different mixes of pheromones. Comparing the genetic information of bumble bees with that of other insects showed that the bumble bees and their close relatives, stingless bees, often had extra copies of genes for certain FAR enzymes. Inserting some of these genes into yeast cells caused the yeast to make the correct blend of bumble bee pheromones, confirming that these genes did indeed produce the mixture of chemicals in these signals.

          Further, detailed analysis of the bumble bees’ genetic information revealed many genetic sequences, called transposable elements, close to the genes for the FAR enzymes. Transposable elements make the genetic material less stable; they can be ‘cut’ or ‘copied and pasted’ in multiple locations and often cause other genes to be duplicated or lost. Tupec et al. concluded that these transposable elements led to a dramatic increase in the number of genes for FAR enzymes in a common ancestor of bumble bees and stingless bees, ultimately allowing a new pheromone ‘language’ to evolve in these insects.

          These results add to our understanding of the chemical and genetic events that influence what chemicals insects use to communicate with each other. Tupec, Buček et al. also hope that a better knowledge of the enzymes that insects use to make pheromones could have wide applications. Other insects – including pest moths – use a similar mixture of fatty alcohols as pheromones. Artificially produced enzymes, such as FAR enzymes, could thus be used to mass-produce pheromones that may control insect pests.

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          Most cited references58

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          Evolution by gene duplication: an update

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            Orthologs, paralogs, and evolutionary genomics.

            Orthologs and paralogs are two fundamentally different types of homologous genes that evolved, respectively, by vertical descent from a single ancestral gene and by duplication. Orthology and paralogy are key concepts of evolutionary genomics. A clear distinction between orthologs and paralogs is critical for the construction of a robust evolutionary classification of genes and reliable functional annotation of newly sequenced genomes. Genome comparisons show that orthologous relationships with genes from taxonomically distant species can be established for the majority of the genes from each sequenced genome. This review examines in depth the definitions and subtypes of orthologs and paralogs, outlines the principal methodological approaches employed for identification of orthology and paralogy, and considers evolutionary and functional implications of these concepts.
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              The role of lineage-specific gene family expansion in the evolution of eukaryotes.

              A computational procedure was developed for systematic detection of lineage-specific expansions (LSEs) of protein families in sequenced genomes and applied to obtain a census of LSEs in five eukaryotic species, the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe, the nematode Caenorhabditis elegans, the fruit fly Drosophila melanogaster, and the green plant Arabidopsis thaliana. A significant fraction of the proteins encoded in each of these genomes, up to 80% in A. thaliana, belong to LSEs. Many paralogous gene families in each of the analyzed species are almost entirely comprised of LSEs, indicating that their diversification occurred after the divergence of the major lineages of the eukaryotic crown group. The LSEs show readily discernible patterns of protein functions. The functional categories most prone to LSE are structural proteins, enzymes involved in an organism's response to pathogens and environmental stress, and various components of signaling pathways responsible for specificity, including ubiquitin ligase E3 subunits and transcription factors. The functions of several previously uncharacterized, vastly expanded protein families were predicted through in-depth protein sequence analysis, for example, small-molecule kinases and methylases that are expanded independently in the fly and in the nematode. The functions of several other major LSEs remain mysterious; these protein families are attractive targets for experimental discovery of novel, lineage-specific functions in eukaryotes. LSEs seem to be one of the principal means of adaptation and one of the most important sources of organizational and regulatory diversity in crown-group eukaryotes.
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                Author and article information

                Contributors
                Role: Reviewing Editor
                Role: Senior Editor
                Journal
                eLife
                Elife
                eLife
                eLife
                eLife Sciences Publications, Ltd
                2050-084X
                04 February 2019
                2019
                : 8
                : e39231
                Affiliations
                [1 ]Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences PragueCzech Republic
                [2 ]deptDepartment of Biochemistry, Faculty of Science Charles University PragueCzech Republic
                [3 ]Okinawa Institute of Science and Technology Graduate University OkinawaJapan
                [4 ]deptDepartment of Zoology, Faculty of Science Charles University PragueCzech Republic
                [5 ]deptDepartment of Entomology Max Planck Institute for Chemical Ecology JenaGermany
                University of Pretoria South Africa
                Max Planck Institute for Chemical Ecology Germany
                University of Pretoria South Africa
                ICIPE South Africa
                Author notes
                [†]

                These authors contributed equally to this work.

                Author information
                http://orcid.org/0000-0003-2371-4850
                http://orcid.org/0000-0002-6894-6826
                http://orcid.org/0000-0001-9821-7731
                https://orcid.org/0000-0002-2178-9819
                Article
                39231
                10.7554/eLife.39231
                6361591
                30714899
                3a827cfa-a6bb-4a83-8ea5-ce8995b58949
                © 2019, Tupec et al

                This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

                History
                : 14 June 2018
                : 10 January 2019
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100001824, Czech Science Foundation;
                Award ID: 15-06569S
                Award Recipient :
                Funded by: Ministerstvo skolstvi, mladeze a telovychovy CR;
                Award ID: NPU LO 1302
                Award Recipient :
                The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
                Categories
                Research Article
                Evolutionary Biology
                Custom metadata
                A fatty acyl reductase gene family expansion in the Hymenoptera crown group led to recruitment of novel pheromone-biosynthetic enzymes and is linked to evolution of pheromone marking behavior.

                Life sciences
                fatty acyl reductases,gene family evolution,transposable elements,bombus terrestris,bombus lucorum,bombus lapidarius,other

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