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      Collagen IV and basement membrane at the evolutionary dawn of metazoan tissues

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          Abstract

          The role of the cellular microenvironment in enabling metazoan tissue genesis remains obscure. Ctenophora has recently emerged as one of the earliest-branching extant animal phyla, providing a unique opportunity to explore the evolutionary role of the cellular microenvironment in tissue genesis. Here, we characterized the extracellular matrix (ECM), with a focus on collagen IV and its variant, spongin short-chain collagens, of non-bilaterian animal phyla. We identified basement membrane (BM) and collagen IV in Ctenophora, and show that the structural and genomic features of collagen IV are homologous to those of non-bilaterian animal phyla and Bilateria. Yet, ctenophore features are more diverse and distinct, expressing up to twenty genes compared to six in vertebrates. Moreover, collagen IV is absent in unicellular sister-groups. Collectively, we conclude that collagen IV and its variant, spongin, are primordial components of the extracellular microenvironment, and as a component of BM, collagen IV enabled the assembly of a fundamental architectural unit for multicellular tissue genesis.

          DOI: http://dx.doi.org/10.7554/eLife.24176.001

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          The emergence of the diversity of multicellular animals involved cells joining together to form tissues and organs. The ‘glue’ that enabled the cells to work together is made of rope-like molecules called collagen, which assemble into scaffolds. These smart scaffolds tether proteins forming basement membranes that connect cells, provide strength to tissues, and transmit information that influences how the cells behave.

          How did collagen evolve over millions of years to enable the ever-increasing complexity, size and diversity of animals? To investigate, Fidler, Darris, Chetyrkin et al. explored the tissues of the most ancient of currently living animals – the comb jellies and sponges. This revealed that among all the collagens that make up the human body, a type called collagen IV was a key innovation that enabled single celled organisms to evolve into multicellular animals. Collagen IV, as molecular glue, enabled the formation of a fundamental architectural unit of basement membrane and cells that allowed multicellular tissues and organs to evolve.

          The findings presented by Fidler, Darris, Chetyrkin et al. pose questions about how collagen IV glues cells together, and how information is stored in the rope-like scaffolds to influence cell behavior. Understanding these processes could ultimately lead to the development of new treatments for diseases in which the collagen smart scaffolds play a key role, such as in kidney diseases and cancer.

          DOI: http://dx.doi.org/10.7554/eLife.24176.002

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          Most cited references41

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          The Amphimedon queenslandica genome and the evolution of animal complexity.

          Sponges are an ancient group of animals that diverged from other metazoans over 600 million years ago. Here we present the draft genome sequence of Amphimedon queenslandica, a demosponge from the Great Barrier Reef, and show that it is remarkably similar to other animal genomes in content, structure and organization. Comparative analysis enabled by the sequencing of the sponge genome reveals genomic events linked to the origin and early evolution of animals, including the appearance, expansion and diversification of pan-metazoan transcription factor, signalling pathway and structural genes. This diverse 'toolkit' of genes correlates with critical aspects of all metazoan body plans, and comprises cell cycle control and growth, development, somatic- and germ-cell specification, cell adhesion, innate immunity and allorecognition. Notably, many of the genes associated with the emergence of animals are also implicated in cancer, which arises from defects in basic processes associated with metazoan multicellularity.
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            The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.

            Choanoflagellates are the closest known relatives of metazoans. To discover potential molecular mechanisms underlying the evolution of metazoan multicellularity, we sequenced and analysed the genome of the unicellular choanoflagellate Monosiga brevicollis. The genome contains approximately 9,200 intron-rich genes, including a number that encode cell adhesion and signalling protein domains that are otherwise restricted to metazoans. Here we show that the physical linkages among protein domains often differ between M. brevicollis and metazoans, suggesting that abundant domain shuffling followed the separation of the choanoflagellate and metazoan lineages. The completion of the M. brevicollis genome allows us to reconstruct with increasing resolution the genomic changes that accompanied the origin of metazoans.
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              The Trichoplax genome and the nature of placozoans.

              As arguably the simplest free-living animals, placozoans may represent a primitive metazoan form, yet their biology is poorly understood. Here we report the sequencing and analysis of the approximately 98 million base pair nuclear genome of the placozoan Trichoplax adhaerens. Whole-genome phylogenetic analysis suggests that placozoans belong to a 'eumetazoan' clade that includes cnidarians and bilaterians, with sponges as the earliest diverging animals. The compact genome shows conserved gene content, gene structure and synteny in relation to the human and other complex eumetazoan genomes. Despite the apparent cellular and organismal simplicity of Trichoplax, its genome encodes a rich array of transcription factor and signalling pathway genes that are typically associated with diverse cell types and developmental processes in eumetazoans, motivating further searches for cryptic cellular complexity and/or as yet unobserved life history stages.
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                Author and article information

                Contributors
                Role: Reviewing editor
                Journal
                eLife
                Elife
                eLife
                eLife
                eLife
                eLife Sciences Publications, Ltd
                2050-084X
                18 April 2017
                2017
                : 6
                : e24176
                Affiliations
                [1 ]deptDepartment of Medicine, Division of Nephrology and Hypertension , Vanderbilt University Medical Center , Nashville, United States
                [2 ]deptAspirnaut Program , Vanderbilt University Medical Center , Nashville, United States
                [3 ]deptDepartment of Biological Sciences , Tennessee State University , Nashville, United States
                [4 ]deptCenter for Matrix Biology , Vanderbilt University Medical Center , Nashville, United States
                [5 ]deptCenter for Structural Biology , Vanderbilt University Medical Center , Nashville, United States
                [6 ]deptDepartment of Pathology, Microbiology, and Immunology , Vanderbilt University Medical Center , Nashville, United States
                [7 ]deptDepartment of Medical Education and Administration , Vanderbilt University Medical Center , Nashville, United States
                [8 ]deptDepartment of Biological Sciences , Vanderbilt University Medical Center , Nashville, United States
                [9 ]deptDepartment of Cell and Developmental Biology , Vanderbilt University Medical Center , Nashville, United States
                [10 ]deptDepartment of Biochemistry , Vanderbilt University Medical Center , Nashville, United States
                [11 ]deptVanderbilt-Ingram Cancer Center , Vanderbilt University Medical Center , Nashville, United States
                [12 ]deptVanderbilt Institute of Chemical Biology , Vanderbilt University Medical Center , Nashville, United States
                Howard Hughes Medical Institute and Institute of Genetic Medicine, Johns Hopkins University School of Medicine , United States
                Howard Hughes Medical Institute and Institute of Genetic Medicine, Johns Hopkins University School of Medicine , United States
                Author notes
                [†]

                These authors contributed equally to this work.

                Author information
                http://orcid.org/0000-0002-2519-8864
                http://orcid.org/0000-0002-7248-6551
                http://orcid.org/0000-0002-5420-4100
                Article
                24176
                10.7554/eLife.24176
                5395295
                28418331
                4be2227a-d9fe-4d9b-804c-f68dfad02049
                © 2017, Fidler et al

                This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

                History
                : 13 December 2016
                : 23 March 2017
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, National Institutes of Health;
                Award ID: DK18381
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000001, National Science Foundation;
                Award ID: DEB-1442113
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000912, March of Dimes Foundation;
                Award ID: March of Dimes Prematurity Research Center Ohio Collaborative
                Award Recipient :
                Funded by: Aspirnaut Program;
                Award Recipient :
                The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
                Categories
                Research Article
                Developmental Biology and Stem Cells
                Genomics and Evolutionary Biology
                Custom metadata
                2.5
                Collagen IV is a primordial extracellular matrix component associated with the transition to animal multicellularity, and enabled the formation and evolution of epithelial tissues.

                Life sciences
                ctenophora,basement membrane,collagen iv,epithelial cells,other
                Life sciences
                ctenophora, basement membrane, collagen iv, epithelial cells, other

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